Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04712 ATGCATTTTTTTCACTCTCAAATCCATATTAACAATGGTGCTATCACAAATCCTCCTATTCTTTCTCCATATTCTTCTTCAACTCCTTATAGCCAAAAAGCATCAGAACCAGCTCCAATTTCTTCATCTGGAAACAAAATAAGTCCTGCAATTCTCTTTATCATAGTTATATTAGCTATTATATTTTTCATTCTAGGTTTTCTTCACTTGCTTGTTAGGTTTCTCATAAAGCATAGATCTTCTAGCTCTTCATCAATTTCTCAATCAAATAGGTTTCCTGAAATGTCTGAATCTGATGCATATCAAAGACAGTTGCAGCAGCTTTTCAATCTTCATGATTCAGGTTTGGATCAAGCATTCATTGATGCTCTTCCTGTTTTCATTTACAAAGAGATTGTAGGTTTGAAAGAGCCTTTTGATTGTGCTGTTTGTCTAAGTGAGTTTTTGGAACAAGATAAACTTAGATTGTTACCTAATTGTAATCATGCTTTTCATATTAACTGCATAGATACATGGTTATTGTCAAATTCAACTTGTCCTTTATGTAGAGGAACACTTTATGCTCAAGGGTTTTCGTTAGAGAAAAATCCTGTTTTTGAGTTTGAGGATCAAAGGGATGAAGATTGTGTTATAGGTATTGGTTCAGTTAACAAGAATATGGAAAACCATATAATGAATAGGAAAAGGGTTTTTTCTGTTAGGCTTGGAAAGTTTAGAAGTTCAAATAATGGAGAAGGGGTTGAAAAAAGTGAAGGAGAGAGTAGTAGCTGTAATTTCGATGTTAGGAGATGCTACTCAATGGGATCTTTTCAGTATGTTGTTTGTGATTCAGATTTGCAAGTTGCTTTGAGACCTTCTAAAGGTGATGGAAGTATCAGACGATTGAAGGGAATTAGAGAAATTCATGATGAGAGTTTTTCCAATGATGGAGATATTGAAGGCAAGAAAATCAACATTGCGAGGAAAGGTGAAAGTTTTTCTGTTTCAAAGATTTGGCAATGGTCTAAGAAAGATAATAAGATACCAAGTTCATCAGATACACATTTTCATAATTGTGTTGTTGTCAATGAAAATTTGCCATGGATGAGTAAAGCTAGAGGTACATGA 1107 0.3388 MHFFHSQIHINNGAITNPPILSPYSSSTPYSQKASEPAPISSSGNKISPAILFIIVILAIIFFILGFLHLLVRFLIKHRSSSSSSISQSNRFPEMSESDAYQRQLQQLFNLHDSGLDQAFIDALPVFIYKEIVGLKEPFDCAVCLSEFLEQDKLRLLPNCNHAFHINCIDTWLLSNSTCPLCRGTLYAQGFSLEKNPVFEFEDQRDEDCVIGIGSVNKNMENHIMNRKRVFSVRLGKFRSSNNGEGVEKSEGESSSCNFDVRRCYSMGSFQYVVCDSDLQVALRPSKGDGSIRRLKGIREIHDESFSNDGDIEGKKINIARKGESFSVSKIWQWSKKDNKIPSSSDTHFHNCVVVNENLPWMSKARGT 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04712 368 CDD RING-H2_EL5-like 140 183 - -
Vifa1g04712 368 SUPERFAMILY RING/U-box 120 189 - -
Vifa1g04712 368 FunFam RING-H2 finger protein ATL46 103 188 - -
Vifa1g04712 368 Pfam Ring finger domain 140 183 IPR001841 -
Vifa1g04712 368 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Vifa1g04712 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 42 332 - -
Vifa1g04712 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 190 IPR013083 -
Vifa1g04712 368 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04712 Vifa-Chr1 735672597 735673703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04712 40 345 C3H Transcription Factor Family AT2G18650 42.647 4.68e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04712 - - tpra:123906744 486.108