Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04695 ATGCAAGCAATGGGGTTATCAGTAGCAGTTTCAGTTCCATTTTACCATTCCAGATTATGCATCAATGCCTCTCCTCATCCACCCATTCCCCTCAATTTGAATCATGGCTTTTCCAAATCACTTACATTCAGGGACAGACTAACTCGTGGGAAGAGTAGCTATGTCATTCGTTCCCAAAAGAATCGTGACGATGATGGTGATGTCGATGGATTTTACATGAGGAAAAGCGTTGAGATCGCCAGAAAGGCTTTGGGGTGTACAAGCCCCAATCCTTTAGTTGGATGTGTTATTGTCAAAGATGGTCAAATTGTTGGCCAAGGTTTTCATCCTAAACCTGGTCAACCTCATGCTGAGGTGTTTTCTCTGAGAGATGCTGCTGATTTGGACGAGAATGCAACGACGTATGTCACTTTAGAACCTTGTAATCATTTTGGGAGGACTCCGCCTTGCACTAAAGTTCTCATTAAAGCTAGACTTAAAAAGGTTGTTGTTGGGATGGTGGATCCAAATCCTATCGTGGCTTCCAAAGGGTTAGATAGATTGAGAGGTGCTGGAATTGAAGTTGTTGTTGGTGTTGAGGAAGAATTGTGTAAGGGCCTCAATGAGGGTTATATGCTTGCTTGTGATCACCCACTTCTTGTTAAAGAATACAATTCTGATCCCGTTGGAAAAGATTCTGTTGAAATGGCAAAAAGGCTTCCAAAAGAGATGCTGATAAATCTGTTTAATAGTTTGGAAACAACTGCCGCTATATGTTTTGTCTGCAATAGGCCAGAGAATAAGCTTGGAGATGATGAAACGTGGGATAGGGCTGAAAGTGCTCTCAAGGAGGCTTTGGATGAGTGTGGCAAAGGGAATGTGTTTGTTAAGAACTTAGCGAAATCGATAGATAATGTGGGACTGCATGATTTATTTCAAGAATATGGGAATATTTTGTCTAGCAAAATTGTCATCTCTGAAGATGGGAAGAGCAAAGGGTTTGGTTATATACAGTTTGGTTCAGAGGAGTCTGCAAATGATGCTATCCAGAAAATGAATGGCTCTACTGTGAGAGATAAGGAGATATATGTTGGGAAATTTATCAGAAAAAGTGAGCGCTCTTTGCCTGAACCTGATGCCAAATATACAAACTTGTACGTTAAGAATTTGGACCCAGATATTACCGAAGCACTTCTTAAAGAAAAGTTCTCATCTTTTGGAAAAATTCTTATCTTGGCTATTGTAAAGGATGAGAAGGGGTTGTCAAAAGGTTTTGGATTTATGAACTATGAAAACCCGGATGATGCAAGACGAGCAACAGAAGCAATGAATGGATCACAATTTGGTTCAAAGAACCTGTATGTTGCAAGAGCACAAAAAAAGGTTGAACGTGAGAAGATCTTGCATCAGTGGTTTGCAGAAAGATGCATGGAGAAAAACTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATAGTGTTAGTGACGAAGAACTAAAGAGTCAGTTTGTGCAAATCAACAAAGAGAATCGCAAGCAGCTTCCTTATCAAATTACAGGCATGGTTAAACCATCCAAGCTTTTAACATGCTTCCAGTGGGGTGCCTTGATGGTGGCAGGTCTGTGCAGAGGAAAGATGTTAGGCAAAGCCTATTGCAGCTCCAGCATTCACACTGGTGTTGTTTATCATCACCCTAAGGGTTCTACAACATTTTATCATCATTCATCGGGTTCTATTGGATTGGAATCACCCGCTGATGGTAGACGTTCATCTGAGTCTAGCTACCGTATTGGAGATAATGGAACTTCAGGGGGGACAAATTAG 1812 0.4078 MQAMGLSVAVSVPFYHSRLCINASPHPPIPLNLNHGFSKSLTFRDRLTRGKSSYVIRSQKNRDDDGDVDGFYMRKSVEIARKALGCTSPNPLVGCVIVKDGQIVGQGFHPKPGQPHAEVFSLRDAADLDENATTYVTLEPCNHFGRTPPCTKVLIKARLKKVVVGMVDPNPIVASKGLDRLRGAGIEVVVGVEEELCKGLNEGYMLACDHPLLVKEYNSDPVGKDSVEMAKRLPKEMLINLFNSLETTAAICFVCNRPENKLGDDETWDRAESALKEALDECGKGNVFVKNLAKSIDNVGLHDLFQEYGNILSSKIVISEDGKSKGFGYIQFGSEESANDAIQKMNGSTVRDKEIYVGKFIRKSERSLPEPDAKYTNLYVKNLDPDITEALLKEKFSSFGKILILAIVKDEKGLSKGFGFMNYENPDDARRATEAMNGSQFGSKNLYVARAQKKVEREKILHQWFAERCMEKNLKYKGSNIYVKNIDDSVSDEELKSQFVQINKENRKQLPYQITGMVKPSKLLTCFQWGALMVAGLCRGKMLGKAYCSSSIHTGVVYHHPKGSTTFYHHSSGSIGLESPADGRRSSESSYRIGDNGTSGGTN 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04695 603 SUPERFAMILY RNA-binding domain, RBD 375 508 IPR035979 GO:0003676
Vifa1g04695 603 PANTHER RNA BINDING PROTEIN 235 501 - -
Vifa1g04695 603 FunFam Polyadenylate-binding protein 286 366 - -
Vifa1g04695 603 SMART rrm1_1 377 449 IPR000504 GO:0003723
Vifa1g04695 603 SMART rrm1_1 286 358 IPR000504 GO:0003723
Vifa1g04695 603 SUPERFAMILY RNA-binding domain, RBD 284 366 IPR035979 GO:0003676
Vifa1g04695 603 CDD Riboflavin_deaminase-reductase 73 185 - -
Vifa1g04695 603 Gene3D - 365 469 IPR012677 -
Vifa1g04695 603 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 67 189 IPR002125 -
Vifa1g04695 603 MobiDBLite consensus disorder prediction 576 603 - -
Vifa1g04695 603 FunFam Riboflavin biosynthesis protein RibD 67 206 - -
Vifa1g04695 603 SUPERFAMILY Cytidine deaminase-like 69 207 IPR016193 GO:0003824
Vifa1g04695 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 355 IPR000504 GO:0003723
Vifa1g04695 603 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 446 IPR000504 GO:0003723
Vifa1g04695 603 NCBIfam bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD 73 210 IPR004794 GO:0008835|GO:0009231
Vifa1g04695 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 362 IPR000504 GO:0003723
Vifa1g04695 603 Gene3D Cytidine Deaminase, domain 2 58 209 - -
Vifa1g04695 603 FunFam Polyadenylate-binding protein 367 461 - -
Vifa1g04695 603 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 376 453 IPR000504 GO:0003723
Vifa1g04695 603 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 71 166 IPR002125 -
Vifa1g04695 603 Gene3D - 256 364 IPR012677 -
Vifa1g04695 603 MobiDBLite consensus disorder prediction 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04695 Vifa-Chr1 732671116 732675485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04695 285 504 Eukaryotic Initiation Factors Gene Family AT2G36660 30.357 1.91e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04695 K13126 - gmx:100798828 330.102