Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04694 ATGATCCAAATAACAAACGGGTCGGGTCGTCGGGTATTCAATTTCCCGGCGGTTCATCCATACCCGAACATCGCTCTTTCCACTCTTCTCACTTCCCTCATCACTCTCTCCGACGATATCTCCAATCTCCAACACAAATTCTTCTCTTCCAACAAACGAAACGCGAAAAAAGCTATTCGTTTGATTCATCTTCTCCAACCATTCCTTCATGATGTCCGAGAAAATCACTCCAATCTTCCATCTCCGGCGACGCTCTGTTTCACCGAGCTTCATTTCATCTTTCAGAAGCTTCTTTTCTTGATGCAAGATTCAACCAGAGAAGGTGCAAGGTTGTTTATGCTAATGGAGTCGGGTCAGGTTGCAACAATGTTTCGGGTGTTGTTCCGATCCGCTGCAGCTGCACTTGATGTTTTTCCTTTTTATGCTGTTGATGTGTCTGTGGAAGCTAAAGAGGATGTTTTGTTGTTGATGAAGCAAGCGAGGGAGGGGAGGTTTGAATTTGAGGTTGAGGATGAGGATGTAGTGATGTGTGTTGTGAATGTCTTGAAGCTGTTTGAGAAAAGGGTTGCTCCGGAAAAGTTTGATTTGAAACGTGTTCTTGATTATATTGGGGTTTTGAAATGGAGTGAGGTTGATAAAGAGGTGAGGTTTTTGGATGGTGAAATTGGGTTTGAGTGGTTGAATGAGAAAAAGAAAAAGGTGGATTTTTTAAGTAGTTTGATGGGGTTTATGAGTTATTGTAGATGTGTCATGATGGATGTGGCGATGGAAATTGTGGACTTCGAAGAGGGGAAAAGTAGCAAGAAAACTGATACAAGAATACAAACTGAAATGATTTTGAGTTGTGTAAACTCTGATGATTTTCGATGTCCAATCTCTTTGGAGTTGATGACTGATCCTGTGACTATAGAAACAGGTCATACTTATGATCGTTCTTCGATTCTCAAATGGTTTAAAAGTGGAAATGCGATGTGTCCAAAGACAGGTAAAAGTCTTAGCAGCATTGAATTGGTACCTAATTTGGTACTTGGGAAGTTGATTCGACAGTACTGCAATGTCAATGGCATTCCTTTTTCTGATTCGGGTCGTCGGAATTGGGACATGACAAGGACAATGCAGCCTGGAAGTGCAGCTGCAGAGGGAGCGATGAAGCTCTTGGCTGGTTTTCTTTGTAGATGTCTTGACAACGGAAATGTGGAACAGAAGAGCCGTGCTGCATTTGAGGCAAGAGTTCTTACCAAAACAAGCATTTTTAGTAGGTCTTGTTTGGTAGAAGCTGGTTCAGTTCCTCTTTTGTTGTTGTTGTTGGCATCAAGTGATTCATCAGCACAAGAGAATGCCATTGCAGCCCTTTTAAACCTCTCAAAATACACCAAAAGTAGAAGTGAAATGGTTGAAAATTGGGGATTAGAAATGATTGTTGGAGTCTTAAACAAAGGGATAACAATAGAAGCAAAACAACATGCTGCAGCAGTGTTGTTTTACCTTGCTTCGAATGCCGACCATGGTAACTTAATAGGCAAAGAGCCAGAAGCAATTCCCTCATTGATCAGTCTCATCAAAGACGGCACTGATCGAAGTGTAAAGAATGGTTTGGTTGCAATTTTTGGCCTCCTAAAAAGCCATGAAAATCACAAGAGGATACTTGCTGCTCAAGCAACTCCTTTGTTAGTTAACATCTTAAAAGCACATGAAAAAGAAGACTCTGTCACAGACTCACTAGCAATTCTAGCAACTCTTGCAGAGAAAAGCGACGGAACGATGGAAATCCTCCGTTTCGGAGCTTTGCATGTAGCCGTTGAAGTTATGAGTTCTTCCTCCACTACTTCAAGATTAGGGAAAGAGCATTGTGTCTCTTTGTTGCTTTCTCTATCAATGAATGGAGGGGAAAATGTGGTTGCTCATTTAGTGAAGAACTCTTCTCTTATGGAATCTTTATATTCCCAACTAAGTGAAGGAACTTCTCGAGGAAGCAAAAAGGCAAGTTCTCTCATAAGGGTCCTTCATGATTTTTCTGAAAGAAGATCCTCTAAGTACACTACATCAGTTATTCAACGTGAACAATTGATTCATGCATGGTAA 2082 0.4116 MIQITNGSGRRVFNFPAVHPYPNIALSTLLTSLITLSDDISNLQHKFFSSNKRNAKKAIRLIHLLQPFLHDVRENHSNLPSPATLCFTELHFIFQKLLFLMQDSTREGARLFMLMESGQVATMFRVLFRSAAAALDVFPFYAVDVSVEAKEDVLLLMKQAREGRFEFEVEDEDVVMCVVNVLKLFEKRVAPEKFDLKRVLDYIGVLKWSEVDKEVRFLDGEIGFEWLNEKKKKVDFLSSLMGFMSYCRCVMMDVAMEIVDFEEGKSSKKTDTRIQTEMILSCVNSDDFRCPISLELMTDPVTIETGHTYDRSSILKWFKSGNAMCPKTGKSLSSIELVPNLVLGKLIRQYCNVNGIPFSDSGRRNWDMTRTMQPGSAAAEGAMKLLAGFLCRCLDNGNVEQKSRAAFEARVLTKTSIFSRSCLVEAGSVPLLLLLLASSDSSAQENAIAALLNLSKYTKSRSEMVENWGLEMIVGVLNKGITIEAKQHAAAVLFYLASNADHGNLIGKEPEAIPSLISLIKDGTDRSVKNGLVAIFGLLKSHENHKRILAAQATPLLVNILKAHEKEDSVTDSLAILATLAEKSDGTMEILRFGALHVAVEVMSSSSTTSRLGKEHCVSLLLSLSMNGGENVVAHLVKNSSLMESLYSQLSEGTSRGSKKASSLIRVLHDFSERRSSKYTTSVIQREQLIHAW 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04694 693 SMART arm_5 415 456 IPR000225 GO:0005515
Vifa1g04694 693 SMART arm_5 457 498 IPR000225 GO:0005515
Vifa1g04694 693 SMART arm_5 541 582 IPR000225 GO:0005515
Vifa1g04694 693 CDD RING-Ubox_PUB 286 337 IPR045210 -
Vifa1g04694 693 FunFam RING-type E3 ubiquitin transferase 364 679 - -
Vifa1g04694 693 FunFam RING-type E3 ubiquitin transferase 284 356 - -
Vifa1g04694 693 ProSiteProfiles U-box domain profile. 283 357 IPR003613 GO:0004842|GO:0016567
Vifa1g04694 693 SUPERFAMILY RING/U-box 286 358 - -
Vifa1g04694 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 357 IPR013083 -
Vifa1g04694 693 SMART Ubox_2 287 350 IPR003613 GO:0004842|GO:0016567
Vifa1g04694 693 PANTHER U BOX DOMAIN-CONTAINING 50 674 - -
Vifa1g04694 693 Gene3D - 370 688 IPR011989 -
Vifa1g04694 693 Pfam Armadillo/beta-catenin-like repeat 420 455 IPR000225 GO:0005515
Vifa1g04694 693 Pfam U-box domain 286 352 IPR003613 GO:0004842|GO:0016567
Vifa1g04694 693 SUPERFAMILY ARM repeat 389 668 IPR016024 -
Vifa1g04694 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 469 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04694 Vifa-Chr1 732501926 732504007 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04694 1 693 U-box Gene Family AT1G10560 43.697 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04694 - - gmx:100795816 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04694 1 732501926 732504007 Vifa1g04694 1 732501926 732504007 ECH