Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04682 ATGGCGACAAACTCCGGCACCGCCCCGCCGCGTCAACTCTCCCAGAAAGAAACCGACATTCAGTTGATGCTGGCGGCGGACGTCCATCTCGGCACCAAAAACTGCGACTTCCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGACGGTATTTATATTATCAACCTTGGAAAAACATGGGAGAAACTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGACACACTCCTGGAACTTTTACTAATCAGCTTCAAACTTCATTCAGCGAGCCACGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGGGAAGCATAGCATAGGTTGTCTCTTTTGGCTTTTGGCTAGAATGGTGTTGCAGATGCGTGGTACAATTCGCCCTGGTCTTAAATGGGATGTCATGGTGGATCTATTCTTCTATAGAGAACCAGAGGAGGCTAAACAGGAAGAGGAGGATGAAGTTCCTGCTCCAGACTATGCCATTGCTGACTTCAATGCAGCAGCTAACCCCATTGATGGTCAGTGGCCTGCTGCAATCGATCACTCATGGTCTGATGCTGCTCCACAACCTATTCCAGCAGTTCCTGCTGTCAACTGGACAGCCCCAGAAGCTGGGGACTGGGGTGATGCTGTTCCACCACCACAACAAACATCCGTTCCCGGAGTTGAAACTATCGAAGCAACCGGCTGGGAATAA 903 0.4795 MATNSGTAPPRQLSQKETDIQLMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQEEEDEVPAPDYAIADFNAAANPIDGQWPAAIDHSWSDAAPQPIPAVPAVNWTAPEAGDWGDAVPPPQQTSVPGVETIEATGWE 300
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04682 300 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 Pfam Ribosomal protein S2 23 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 Pfam Ribosomal protein S2 122 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 Hamap 40S ribosomal protein SA [rps-0]. 7 247 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vifa1g04682 300 MobiDBLite consensus disorder prediction 273 300 - -
Vifa1g04682 300 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Vifa1g04682 300 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04682 300 PANTHER 40S RIBOSOMAL PROTEIN SA 10 299 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa1g04682 300 NCBIfam 30S ribosomal protein S2 16 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa1g04682 300 Gene3D - 19 224 - -
Vifa1g04682 300 FunFam 40S ribosomal protein SA 19 225 - -
Vifa1g04682 300 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa1g04682 Vifa-Chr1 731302012 731303841 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04682 1 300 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.039 1.45e-151 424