Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04681 ATGGCGACAAACTCCGGCACCGCCCCGCCGCGTCAACTCTCCCAGAAAGAAACCGACATTCAGTTGATGCTGGCGGCGGACGTCCATCTCGGCACCAAAAACTGCGACTTCCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGACGGTATTTATATTATCAACCTTGGAAAAACATGGGAGAAACTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAGAATCCTCAGGATATTATTGTTCAATCTGCTAGACCTTATGGACAGAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATCGCTGGAAGACACACTCCTGGAACTTTTACTAATCAGCTTCAAACTTCATTCAGCGAGCCACGTCTTCTCATCCTCACTGACCCAAGAACTGATCACCAGCCAATTAAAGAAGCAGCTCTTGGGAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGCGATATGTTGACATTGGAATTCCTGCCAACAACAAAGGGAAGCATAGCATAGGTTGTCTCTTTTGGCTTTTGGCTAGAATGGTGTTGCAGATGCGTGGTACAATTCGCCCTGGTCTTAAATGGGATGTCATGGTGGATCTATTCTTCTATAGAGAACCAGAGGAGGCTAAACAGGAAGAGGAGGATGAAGTTCCTGCTCCAGACTATGCCATTGCTGACTTCAATGCAGCAGCTAACCCCATTGATGGTCAGTGGCCTGCTGCAATCGATCACTCATGGTCTGATGCTGCTCCACAACCTATTCCAGCAGTTCCTGCTGTCAACTGGACAGCCCCAGAAGCTGGTACACGATTAATTGCAGGGGACTGGGGTGATGCTGTTCCACCACCACAACAAACATCCGTTCCCGGAGTTGAAACTATCGAAGCAACCGGCTGGGAATAA 921 0.4777 MATNSGTAPPRQLSQKETDIQLMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQEEEDEVPAPDYAIADFNAAANPIDGQWPAAIDHSWSDAAPQPIPAVPAVNWTAPEAGTRLIAGDWGDAVPPPQQTSVPGVETIEATGWE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04681 306 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 Gene3D - 19 224 - -
Vifa1g04681 306 PANTHER 40S RIBOSOMAL PROTEIN SA 10 305 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa1g04681 306 NCBIfam 30S ribosomal protein S2 16 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vifa1g04681 306 Hamap 40S ribosomal protein SA [rps-0]. 7 247 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vifa1g04681 306 MobiDBLite consensus disorder prediction 286 306 - -
Vifa1g04681 306 FunFam 40S ribosomal protein SA 19 225 - -
Vifa1g04681 306 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 Pfam Ribosomal protein S2 23 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 Pfam Ribosomal protein S2 122 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g04681 306 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04681 Vifa-Chr1 731302012 731303841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04681 1 306 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 70.645 4.59e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04681 K02998 - gmx:548014 544.273