Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04680 ATGTCCTTGTTAACCGTGGCGCATCAAAGAGGCTCAGGTGAGTTCACCGGATTCACGGTGAAACGCGACGGTGAAGATCACGACGACGGTGGTAATGATGGTGGAAAATTAATGGTTTCTGGGTATAATGGTGATAGAGAAAGAAATGAAATGGTTTCAGCTCTTGCACATGTTGCATCATCAGGGTCAAATAAAATGAGTAATGCTAATAGTGAATGGATTCAAAGAACTAGCTTTGGAAATACACCATCTTATTCATCTTCATTTTATTCTTCGGGTTCGGGTTCGAGTTCGAGTTCGGGCTTATTCGTGCCCTCTGGATCATGGATTGGTCACAAAAGAGAGCGTGATGAAGAAAGTAGTGATTCTAATCAGTTTATAACACAAAATGTTCCTAAGCTTTTTAGAACTGTTATGGTACCTTCTCAAGGTTCAAGAGAATCATCTTCATTAGTAACTGAAGAAGCTCCAGCCACAACAACCATAACCGTCGCCACATCGACACCGACACCGACACCACCGTCATTCGAAGAAAGCGGCGAGAGAAGAAGAAGATACCGAGGAGTTCGGCAAAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCACACAAAGCAGCAAGAGTCTGGCTAGGAACATTCGACACAGCAGAAGCAGCAGCAAGAGCTTACGATGAAGCCGCATTGCGATTCCGAGGAAGCAGAGCGAAACTCAACTTCCCCGAAAATGTCAGATCAATTATGCCGCCGCCGCCACAACCACATCTTCAATCTCTGCCAACCGCGGCAGTTGCCTCTCGAACACTGCCGCAGCCGGCGTTTCAAGGCTCATCTGATTTTATCAGAGACTATTTAGAATACTCTCAAATTCTTCAAAGCTCCGGTGATTTTCAGCTACAGCAAATGCAACAACAACAACAGCAATTACAAGCTTCAAATTTGGTTCAACAATGGTATTACAATTCACAATTGGCACCACTTCAATCTACATCACCTTCATTTTCACCATCTACTCAAATTTCCAATTCCTCTCCTTCATTTCCTCTGTTTTCTACTCAACCAATGGAATTTTTCCGGCCGCCGGAAAATCCTCCGCCTGATGGCATGTTTCCGCCGACAACTTGGTCAGATACTAGTGGTCATCCACCACCACCTTATGGTTGA 1167 0.4473 MSLLTVAHQRGSGEFTGFTVKRDGEDHDDGGNDGGKLMVSGYNGDRERNEMVSALAHVASSGSNKMSNANSEWIQRTSFGNTPSYSSSFYSSGSGSSSSSGLFVPSGSWIGHKRERDEESSDSNQFITQNVPKLFRTVMVPSQGSRESSSLVTEEAPATTTITVATSTPTPTPPSFEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGSRAKLNFPENVRSIMPPPPQPHLQSLPTAAVASRTLPQPAFQGSSDFIRDYLEYSQILQSSGDFQLQQMQQQQQQLQASNLVQQWYYNSQLAPLQSTSPSFSPSTQISNSSPSFPLFSTQPMEFFRPPENPPPDGMFPPTTWSDTSGHPPPPYG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04680 388 PANTHER DNA-BINDING DOMAIN 133 313 IPR044808 GO:0003700|GO:0009873
Vifa1g04680 388 FunFam Ethylene-responsive transcription factor 2 184 243 - -
Vifa1g04680 388 Pfam AP2 domain 185 234 IPR001471 GO:0003700|GO:0006355
Vifa1g04680 388 MobiDBLite consensus disorder prediction 331 352 - -
Vifa1g04680 388 PRINTS Ethylene responsive element binding protein signature 186 197 IPR001471 GO:0003700|GO:0006355
Vifa1g04680 388 PRINTS Ethylene responsive element binding protein signature 208 224 IPR001471 GO:0003700|GO:0006355
Vifa1g04680 388 CDD AP2 193 244 IPR001471 GO:0003700|GO:0006355
Vifa1g04680 388 MobiDBLite consensus disorder prediction 164 187 - -
Vifa1g04680 388 ProSiteProfiles AP2/ERF domain profile. 185 242 IPR001471 GO:0003700|GO:0006355
Vifa1g04680 388 SMART rav1_2 185 248 IPR001471 GO:0003700|GO:0006355
Vifa1g04680 388 SUPERFAMILY DNA-binding domain 185 243 IPR016177 GO:0003677
Vifa1g04680 388 MobiDBLite consensus disorder prediction 19 33 - -
Vifa1g04680 388 MobiDBLite consensus disorder prediction 331 388 - -
Vifa1g04680 388 MobiDBLite consensus disorder prediction 15 43 - -
Vifa1g04680 388 Gene3D AP2/ERF domain 184 244 IPR036955 GO:0003700|GO:0006355
Vifa1g04680 388 MobiDBLite consensus disorder prediction 359 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04680 Vifa-Chr1 731251981 731253381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04680 174 246 AP2-EREBP Transcription Factor Family AT5G61890 77.027 2.90e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04680 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04680 - - psat:127127635 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04680 1 731251981 731253381 Vifa1g04680 1 731251981 731253381 ECH
Vifa1g04680 1 731251981 731253381 Vifa3g02770 3 767659559 767660808 PCT