Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04673 ATGAGAACAATGGCGGTTGTAGTACGTTGTTCCTGCTACCTCATTCTCTCTCGCTCACACCTATTTTCTTCCACCGCCAAGAGGTCATCCTCCTCCATCCTCCCATCTTCGTCTGGAGCCTGTCGATTGCGAAAAGTTACTGTAAAATTTAAGACTTGCAACCAGATTGCTTTGGCTATAAAGAATGAGGTTGAGGATCTTGAGAAAGCCGGCGTTACCGTCATCCATATTGGAACAGAATCTATGGTCTTCTTTTTCTCGATAATCCAATTGGAACTGGCTTCAGTGTATCCTAAACCCCACAAGAGATTCCAACCGATCAAAACGGAGTGTCAAAACACCTCCGCTGCCAGGAAGGATGACAAAGCCGTCAACGCCGCTCGCCGTTCCGGCGCCGATATCGAAACCATGAAGAAACATAATGCTGCGACGAACAAAGCTGCGTCTAGCAGCACTTCGTTGAACACTAAGAGGCTGGATGAGGATACAAAGAATTTAGCTCATGATCGGGTCCCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGGACGGACAAGAAACTTACTCAGGCGCAACTTGCCCAAATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAATCAGGAGAAGCCATTCCAAATCAGCAGATAATTGGCAAGTTGGAGAGAGCACTTGGTGCCAAACTGCTTGGGAAAAAATGA 705 0.4652 MRTMAVVVRCSCYLILSRSHLFSSTAKRSSSSILPSSSGACRLRKVTVKFKTCNQIALAIKNEVEDLEKAGVTVIHIGTESMVFFFSIIQLELASVYPKPHKRFQPIKTECQNTSAARKDDKAVNAARRSGADIETMKKHNAATNKAASSSTSLNTKRLDEDTKNLAHDRVPTELKKAIMQARTDKKLTQAQLAQIINEKPQVIQEYESGEAIPNQQIIGKLERALGAKLLGKK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04673 234 ProSiteProfiles Cro/C1-type HTH domain profile. 179 233 IPR001387 -
Vifa1g04673 234 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 112 234 - -
Vifa1g04673 234 Pfam Cobalamin-independent synthase, Catalytic domain 45 77 IPR002629 GO:0003871|GO:0008270|GO:0009086
Vifa1g04673 234 CDD HTH_XRE 177 227 IPR001387 -
Vifa1g04673 234 FunFam Multiprotein bridging factor 1 163 234 - -
Vifa1g04673 234 Pfam Multiprotein bridging factor 1 112 171 IPR013729 -
Vifa1g04673 234 Pfam Helix-turn-helix 179 228 IPR001387 -
Vifa1g04673 234 Gene3D - 49 77 IPR038071 -
Vifa1g04673 234 Gene3D - 163 234 IPR010982 GO:0003677
Vifa1g04673 234 SUPERFAMILY lambda repressor-like DNA-binding domains 172 229 IPR010982 GO:0003677
Vifa1g04673 234 SMART mbf_short4 178 233 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04673 Vifa-Chr1 730264835 730266311 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vifa1g04673 MBF1 7.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04673 K03627 - gmx:100500420 189.504