Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04662 ATGTTTAAGCACAACAATATTATCCCAAATGAACATTTTCGCAAGCACCGACAAAACTATGCTACTGGCATTGCTATCGATCATCGCTGCAAAAACCATTCTTTGGAGGGTCTTAAAACTAATGTGCAGAGGCTGAAGACATACAAGGCCAATTTGGTTGTTAACCCAAGACGACATGATGTACCTCTACCTTTATTCTGTCTGCAAGATCGGGAGCATAATCGGCCGCGGCGGCGAGATCGTGAAGTAGCTTCGCATGGAGACGAAGGCGAAGATCCAGATCAGGGATACGATTCTGGGATGAGACAAGCGTGTTGTGACGATCTATAG 330 0.4545 MFKHNNIIPNEHFRKHRQNYATGIAIDHRCKNHSLEGLKTNVQRLKTYKANLVVNPRRHDVPLPLFCLQDREHNRPRRRDREVASHGDEGEDPDQGYDSGMRQACCDDL 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04662 109 MobiDBLite consensus disorder prediction 69 109 - -
Vifa1g04662 109 Pfam Ribosomal protein L13e 22 60 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vifa1g04662 109 PANTHER 60S RIBOSOMAL PROTEIN L13 22 60 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vifa1g04662 109 MobiDBLite consensus disorder prediction 69 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04662 Vifa-Chr1 729318540 729319052 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04662 23 58 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 77.778 3.96e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04662 K02873 - atr:18439941 62.3882