Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04642 ATGATGAATTCAGAAATGGCTAAGAAAAATAATGAGTCTAACGGAACGTCTTCTTCTCAAACAGAAAATGGTTCTGAAAAAGATGATTCTGAAAAAGCTCCTGAAAAAGTTTTAGAAAAACAAGCTTCTGCTCCTTCTCCGTCTAAATCACCATCTGATGATGCAAACCCTCCAGAAAAACCACCATCAAAGTCTCCACCTCCGCCTTCATCACCTCCTCCGCAGCATTCTCCACCGCCACCTTTACCACCTCGTTCTCCACCACCTTCTCCACCACTACCACCTCCACAAGCACAAACTCCCCCGGAAGCTCCACCGCCAGATTCTTCGCCACCTCCCTCAAAAGTTTCATCTCCTCCACCTTCTCAATCATCGCCGCCTCAATTGTCACCGCCTCCAAGACCACCGCTATCATCGCCACCAGCTCCGTTATCTTCGCCACCACCACCACTGCCCGACGGTAATTCTCCCACTCCATTACGTTCTGATTCCCCTCCTCCATCTCCTCAGCCTCCATCCTTACCTTCCCCCTCTTCCAAATTTAGTCCTCCACCACCACACGCCCATCCTTTGCCGCCACAATCACCACTCATTTCCCCAAGCTCCCATTTAAAACCAAGCTCTTCTCCTCCCAAAAGCAACTCTCAATCCAAACATTCCTCCTCCAATCCTAATCCAGCACAATACATTGGTTTTACTCTCGCAGCAGTTTTTGTTCTCGCCTTTATCGCAGCCATTCTTTTTCTAGTATTAAGAAAGAGAGAGAAACGAGGGAATGTCTATTGTTTGCCACCCCCCAAGAAATCTCAAATGAAAGGAGATGTGCATTACTATGTAGACTCACCAGGTTTTGGTTATAGTAATAGGAATCATTTAGTTGCAATGAACCATTTGAGAACTCCTTCAGACCCAACACAACAACAAATGAATACTGGCCAAATTTTTTTTAGTTATGAACAGATTGTGGAAATCACTAATGAGTTTTCAAGCGAAAATGTGATAGGAGAAGGAGGTTTTGGCCGTGTTTACAAGGCTTCAATGCCTGATGGTAGAGTTGGAGCGGTTAAGTTATTGAAGGTCGGTAGTGGTCAAGGAGAGAGGGAGTTCAGAGCAGAGGTTGATATTATTAGTCGTGTACATCATCGACATTTGGTATCGTTGATTGGTTATTGTTTATCTGAGCAAAAAAGAGCTCTCATTTATGAGTTTGTTCCTAACGGGAATCTTGATCAACATTTGCATGAAAGTGAATGGAATGTTTTGGATTGGTCCAACAGGATGAAGATAGCAATTGGTGCTGCAAGGGGCTTAGCATATTTACACGAAGGATGCAACCCAAAGATTATTCACAGAGATATTAAGTCGTCGAATATACTCTTGGATAATGCTTATGAGGCACAAGTTGCAGACTTTGGACTTGCCAGATTAACGGACGATGCTAATACTCATGTATCAACTAGGGTGATGGGTACATTTGGCTATATGGCTCCAGAGTATGCAACGAGTGGAAAACTAACGGATAGATCAGATGTTTTCTCATTCGGAGTTGTTCTTCTTGAGCTCATAACTGGAAGGAAACCTGTTGATGCAACACAACCCGTGGGGGATGAGAGTTTGGTCGAGTGGGCTCGTCCACTTCTCCTTCGTGCAATCCAGACAGGTGATTTTAGTGAACTAGCAGACCCAAGGCTTCAACGACAATACGTTGACAGTGAAATGTTTAGAATGATCGAGGCAGCTGCAGCAAGTGTTCGCCATTCTGCCCCAAAACGACCCCGTATGGTTCAGATTGCAAGAGCCTTGGACAGTGGAGATCAACTCTATGATCTATCAAATGGGGTTAAATATGGTCAGAGCACAATTTACGATTCTGGACAGTATAATGAAGACCTTATGAGATTCAAAAGGATGGCTAATGGAAGTTTTGATGACTCTGAATTCGATATTTATAGCTCGGAATACAGTTCAAGAGACATGCCTAGTGGATCTGCATGGATACCACATACTCCAAGTGCCGATTTGCAAGTTAAACCTGTCCAAGAATAA 2046 0.4399 MMNSEMAKKNNESNGTSSSQTENGSEKDDSEKAPEKVLEKQASAPSPSKSPSDDANPPEKPPSKSPPPPSSPPPQHSPPPPLPPRSPPPSPPLPPPQAQTPPEAPPPDSSPPPSKVSSPPPSQSSPPQLSPPPRPPLSSPPAPLSSPPPPLPDGNSPTPLRSDSPPPSPQPPSLPSPSSKFSPPPPHAHPLPPQSPLISPSSHLKPSSSPPKSNSQSKHSSSNPNPAQYIGFTLAAVFVLAFIAAILFLVLRKREKRGNVYCLPPPKKSQMKGDVHYYVDSPGFGYSNRNHLVAMNHLRTPSDPTQQQMNTGQIFFSYEQIVEITNEFSSENVIGEGGFGRVYKASMPDGRVGAVKLLKVGSGQGEREFRAEVDIISRVHHRHLVSLIGYCLSEQKRALIYEFVPNGNLDQHLHESEWNVLDWSNRMKIAIGAARGLAYLHEGCNPKIIHRDIKSSNILLDNAYEAQVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDATQPVGDESLVEWARPLLLRAIQTGDFSELADPRLQRQYVDSEMFRMIEAAAASVRHSAPKRPRMVQIARALDSGDQLYDLSNGVKYGQSTIYDSGQYNEDLMRFKRMANGSFDDSEFDIYSSEYSSRDMPSGSAWIPHTPSADLQVKPVQE 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04642 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Vifa1g04642 681 MobiDBLite consensus disorder prediction 51 199 - -
Vifa1g04642 681 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 237 641 IPR047117 -
Vifa1g04642 681 Gene3D Phosphorylase Kinase; domain 1 290 403 - -
Vifa1g04642 681 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g04642 681 MobiDBLite consensus disorder prediction 200 224 - -
Vifa1g04642 681 SUPERFAMILY Protein kinase-like (PK-like) 304 601 IPR011009 -
Vifa1g04642 681 MobiDBLite consensus disorder prediction 24 38 - -
Vifa1g04642 681 MobiDBLite consensus disorder prediction 1 224 - -
Vifa1g04642 681 Gene3D Transferase(Phosphotransferase) domain 1 404 615 - -
Vifa1g04642 681 SMART serkin_6 328 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04642 681 FunFam proline-rich receptor-like protein kinase PERK8 404 616 - -
Vifa1g04642 681 ProSiteProfiles Protein kinase domain profile. 328 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04642 681 CDD STKc_IRAK 334 602 - -
Vifa1g04642 681 MobiDBLite consensus disorder prediction 657 681 - -
Vifa1g04642 681 Pfam Protein tyrosine and serine/threonine kinase 331 531 IPR001245 GO:0004672|GO:0006468
Vifa1g04642 681 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 303 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04642 Vifa-Chr1 727046151 727049145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04642 188 663 Trihelix Transcription Factor Family AT1G70460 55.777 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vifa1g04642 PK_Tyr_Ser-Thr 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04642 - - tpra:123908299 694.115