Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04640 ATGTCTGAAAGAATTTCTATCGGAAATATTGAGGATAAAAATTTGAAATGCAAAATGATTGAAGAATCTGAGCAAAAAATGAGAAAGAAATTGGAAAATATAACACCAACTTTTGAAGGTGATTTTGAGAAGGGTAAAATGATTGAAGCGGTGGAACCAAAATTGCATAAAGAATCTAATGTAATAACATCATTGGTTGGCAATGTCACCAATCCAAGTTCCAATTTGTTTGAGAATGGTGAACATTCGAGTTCATCCAAAAATGTTATTGATGAAGTTTCAGTTAAGGAAGTGAAGGAATTTCTGTGTCTTTTTTGTGACAAGAAGTTCTCGAATTCTCAAGCTCTCGGAGGTCATCAAAACGCTCATAAACATGAACGTGACTTAAAAAAAAAAGAACAAAAAAAGAGGGAGGAGGAAATGGATTCCACCCTAATGTTTAGATCTAGTTTTACACGTGTAAGTCCTATTCACTATCAAGGGTATCCTTATTTTCATGGCAATTTCCAACAACCAATTGGGACTCAGATGAACAATAACATGCCTTTTTGGCTTGGTTCTTCATCAGTCGGCTATGGAGGGATGTATAATACACCCTCTCCACCATCTCCATTTGTGATGTCAATACCAATACCACCCATCACAACACCACAATGTGAAATGATTGATTTTCTAGGTACAAATCAAACTTCTGCGTTGTCAATTCCTCGATGGCCAAACACTGTGGAGTTGGATTTTTTTGGTCAAACCAATCAGACCCCTTCATCTCGTGAAAGTGCAGAAGGAAGTTCCAATGCTCAACTTTCTTCTCATTATCTTCCAATAGAACATGATTTTATTGGAGAAGGCCAACTTCTAGCACAGACTAATATGTCTTCTTCGTCAACTGAATCATCAACATTGGAAGAACTCGATTTGAATCTCAAACTTTAA 933 0.3633 MSERISIGNIEDKNLKCKMIEESEQKMRKKLENITPTFEGDFEKGKMIEAVEPKLHKESNVITSLVGNVTNPSSNLFENGEHSSSSKNVIDEVSVKEVKEFLCLFCDKKFSNSQALGGHQNAHKHERDLKKKEQKKREEEMDSTLMFRSSFTRVSPIHYQGYPYFHGNFQQPIGTQMNNNMPFWLGSSSVGYGGMYNTPSPPSPFVMSIPIPPITTPQCEMIDFLGTNQTSALSIPRWPNTVELDFFGQTNQTPSSRESAEGSSNAQLSSHYLPIEHDFIGEGQLLAQTNMSSSSTESSTLEELDLNLKL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04640 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Vifa1g04640 310 MobiDBLite consensus disorder prediction 248 267 - -
Vifa1g04640 310 MobiDBLite consensus disorder prediction 120 141 - -
Vifa1g04640 310 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 40 310 IPR044246 GO:0009788
Vifa1g04640 310 MobiDBLite consensus disorder prediction 289 310 - -
Vifa1g04640 310 Coils Coil 122 142 - -
Vifa1g04640 310 ProSitePatterns Zinc finger C2H2 type domain signature. 103 125 IPR013087 -
Vifa1g04640 310 Gene3D Classic Zinc Finger 79 155 - -
Vifa1g04640 310 SUPERFAMILY beta-beta-alpha zinc fingers 94 141 IPR036236 -
Vifa1g04640 310 MobiDBLite consensus disorder prediction 115 141 - -
Vifa1g04640 310 MobiDBLite consensus disorder prediction 289 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04640 Vifa-Chr1 726633227 726634159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04640 49 196 C2H2 Transcription Factor Family AT5G10970 33.548 5.61e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04640 - - psat:127130657 320.857