Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04629 ATGGATTTCAACGATGGCCATGTATCGAAAGAGCATCGCAAGCTTCATCGTTCTGCAACAGAAAGTGTTGATCCAATATCTGTTTCTCCTTTACAACTTTCTTCTCCTAAGTCACCAAAATCTTCAGGGTCTCCAAATGCGCAACTTAAGGGAAGCAGTTTAAGTCGGAAAAATAATCGCCAATCGCATTCTCCAAAAGACGGACGTCCAAAGAAAGGTGGTTCGGGTGGGAAAGGCACCTGGGGTGGATTGCTCGAAACGGATGACATGAACAATCTTGACCCCAACGATCCAAACTATGACAGCGGCGAGGAAATGAATGATTCAAATGAAAAGGAAAAGAATGCGGCGTTGGAAGAGTACAAGAAAAAAGCTACAATAATAGTGGAAGAATACTTTGCAACTGATGATGTTGTTGCAACAATGAGTGAACTTAGAGAAATAGGCAAACCCGAATACAGTTACTATTTCGTCAAAAAGCTTGTCTCGATGTCGATGGACAGACACGACAAAGAAAAAGAAATGGCTGCCATTCTCTTATCTGCACTTTATGCTGACATAATTCATCCTTCACAAGTTTACAAAGGATTCACCAAGTTAGTCGAGTCGGCTGATGATTTGATCGTGGATATACCAGACACGGTCGATATTCTAGCGCTTTTCATAGCTAGAGCTGTTGTTGATGACATCCTTCCACCTGCATTTTTGAAGAAGCAGATAGCGAATTTACCAAATGATTCTAAAGGTGCTGAGGTTTTGATGAAAGCTGAGAAAAGCTATCTGACAGCGCCTTTACACGCTGAAATCATCGAGCGGCGTTGGGGAGGTAGCAAGAATACAACAGTTGATGATGTGAAGGCGAGGATAAACAATTTCTTGAAAGAATATGTAGTAAGTGGTGACAAGAAAGAGGCTTTTCGATGCATCAAAGACTTGAAAGTTCCGTTTTTCCATCACGAGATAGTGAAAAGAGCTCTTATAATGGCGATGGAAAGGCGACAAGCGGAAACACCGTTGCTAGACCTATTGAAAGAAGCAGCTGAAGAAGGTTTCATCAACACAAGCCAAATGTCTAAAGGGTTCAGCAGGTTGATTGAAACTGTCGACGATTTATCGCTTGACATACCAAACGCGCGCGGAATACTTCAACAACTGATAGCGAAAGCGGCTTCTGAAGGTTGGTTATGTGTCTCGTCACTAAAATCACTTACAGCCGAGGATGAAAAGAACAGTATACAAGAAAATGTTGCAAGAAGTTTTAAGATGAAATCACAATCCATCATTCAAGAGTACTTCTTATCGGGTGATATTTTCGAAGTGAATAGTTGTTTAGAACAAGAGAACAGCAAAAACTGCGGCGAATTAAATGCAATCTTTGTTAAAAGACTAATAACTCTAGCAATGGACAGAAAGAATCGAGAGAAAGAAATGGCTTCCGTGTTACTTTCATCGCTTTGTTTTCCACCTGATGATGTTGTGAGCGGTTTCGTGATGCTAATTGAATCAGCAGACGATACTGCTTTAGACAATCCTGTCGTTGTTGAAGATCTCGCTATGTTTCTAGCAAGATCAGTAGTTGATGAAGTTTTAGCACCACAACAGCTCGAAGAGGTTGGAACACAATGTGTAAGTCAAGATTCAATCGGAAGCAAAGTGCTTTTAATGGCGAAATCATTGCTAAAAGCTAGACTCGCGGGCGAGAGAATCTTGAGGTGTTGGGGAGGGGGTGGAAGTAGCAAACCAGGATGGGAGATCGAAGATGTTAAAGACATGATCGGGAAATTGTTGGAGGAATATGAATCGGGCGGTGACATAAAGGAGGCATGTAGATGCATGAAAGAGTTAGGAATGCCATTTTTTCATCATGAAGTTGTTAAGAAAGCTATGGTGAAAACTATTGAAAAGAAGAATGAGAGATTGTGGGGTTTACTCAAAGAGTGTTCTGAATCAGGGTTGATAACTATGAATCAAATGGTTAAAGGTTTTGGAAGAGTTGAAGAAGCTCTTGATGATTTGGCTTTGGATGTTCCTGATGCTAAAAAACAGTTTGGATTTTATGTTGAAAAAGCTAAGAAGGAAGGTTGGTTGGATAGTTCATTTTGCTACAACAATGCAATAGAGAATGGCACAACTTAA 2136 0.4068 MDFNDGHVSKEHRKLHRSATESVDPISVSPLQLSSPKSPKSSGSPNAQLKGSSLSRKNNRQSHSPKDGRPKKGGSGGKGTWGGLLETDDMNNLDPNDPNYDSGEEMNDSNEKEKNAALEEYKKKATIIVEEYFATDDVVATMSELREIGKPEYSYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIIHPSQVYKGFTKLVESADDLIVDIPDTVDILALFIARAVVDDILPPAFLKKQIANLPNDSKGAEVLMKAEKSYLTAPLHAEIIERRWGGSKNTTVDDVKARINNFLKEYVVSGDKKEAFRCIKDLKVPFFHHEIVKRALIMAMERRQAETPLLDLLKEAAEEGFINTSQMSKGFSRLIETVDDLSLDIPNARGILQQLIAKAASEGWLCVSSLKSLTAEDEKNSIQENVARSFKMKSQSIIQEYFLSGDIFEVNSCLEQENSKNCGELNAIFVKRLITLAMDRKNREKEMASVLLSSLCFPPDDVVSGFVMLIESADDTALDNPVVVEDLAMFLARSVVDEVLAPQQLEEVGTQCVSQDSIGSKVLLMAKSLLKARLAGERILRCWGGGGSSKPGWEIEDVKDMIGKLLEEYESGGDIKEACRCMKELGMPFFHHEVVKKAMVKTIEKKNERLWGLLKECSESGLITMNQMVKGFGRVEEALDDLALDVPDAKKQFGFYVEKAKKEGWLDSSFCYNNAIENGTT 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04629 711 Pfam MA3 domain 286 395 IPR003891 -
Vifa1g04629 711 Pfam MA3 domain 420 530 IPR003891 -
Vifa1g04629 711 Pfam MA3 domain 122 232 IPR003891 -
Vifa1g04629 711 Pfam MA3 domain 589 697 IPR003891 -
Vifa1g04629 711 FunFam programmed cell death protein 4 110 263 - -
Vifa1g04629 711 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Vifa1g04629 711 MobiDBLite consensus disorder prediction 1 20 - -
Vifa1g04629 711 ProSiteProfiles MI domain profile. 587 706 IPR003891 -
Vifa1g04629 711 PANTHER PROGRAMMED CELL DEATH 4 20 700 IPR039778 GO:0045892
Vifa1g04629 711 SUPERFAMILY ARM repeat 281 402 IPR016024 -
Vifa1g04629 711 SUPERFAMILY ARM repeat 418 577 IPR016024 -
Vifa1g04629 711 SMART ma3_7 588 697 IPR003891 -
Vifa1g04629 711 SMART ma3_7 420 531 IPR003891 -
Vifa1g04629 711 SMART ma3_7 121 232 IPR003891 -
Vifa1g04629 711 SMART ma3_7 285 396 IPR003891 -
Vifa1g04629 711 SUPERFAMILY ARM repeat 583 701 IPR016024 -
Vifa1g04629 711 SUPERFAMILY ARM repeat 116 278 IPR016024 -
Vifa1g04629 711 MobiDBLite consensus disorder prediction 1 115 - -
Vifa1g04629 711 Gene3D - 409 563 - -
Vifa1g04629 711 Gene3D - 108 261 - -
Vifa1g04629 711 Gene3D - 271 403 - -
Vifa1g04629 711 Gene3D - 571 703 - -
Vifa1g04629 711 FunFam programmed cell death protein 4 409 564 - -
Vifa1g04629 711 MobiDBLite consensus disorder prediction 22 59 - -
Vifa1g04629 711 ProSiteProfiles MI domain profile. 284 405 IPR003891 -
Vifa1g04629 711 ProSiteProfiles MI domain profile. 120 241 IPR003891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04629 Vifa-Chr1 725507783 725510188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04629 595 684 Eukaryotic Initiation Factors Gene Family AT4G30680 33.333 3.96e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04629 - - gmx:102668745 1108.59