Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04616 ATGTCAACACTAAACCATCTTTTTGATCTTCCAGAACAGATATGTTACGTACAATGTGGATTCTGCAACACCATTTTAATGGTAAGTGTTCCATGCAGTAGTTTGTCAATGGTGGTGACAGTAAGATGTGGTCACTGCACAAGTCTTTTATCTGTTAATATGACGAAAGCTTCTTTCGTACCTTTCCATCTTTTAACCTCTCTTAATCATCTCGAGACGCCAAAAGAAAGTAGTAGTCCAGATGAAGATGCAAACAAGGCTTTGATAACTTATTCTGATTGTGAGGATGATGATATAATTCCAATCACCAACGTAGTCAATAAACCACCAGAGAAGAGACAAAGAACACCATCAGCTTATAACCGATTCATCAAAGAAGAGATTAGAAGGCTAAAATCTCAACACCCTGATATGGCTCACAAGGAAGCTTTCAGTACAGCTGCAAAAAATTGGGCAAATTGTCCTCAAATACAGTTCAAAGGAGATGAAGAGAACTGTAACTTGACAGATCATCTTGTGGATCCTGACTCTCAAGTGGATTCTAATGATGCTGAGTTAGAGTTCATGCATTCAATGGCAAAGACTTTATCATCGTTTTGGTTTCCAATCAACTAG 615 0.3805 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMTKASFVPFHLLTSLNHLETPKESSSPDEDANKALITYSDCEDDDIIPITNVVNKPPEKRQRTPSAYNRFIKEEIRRLKSQHPDMAHKEAFSTAAKNWANCPQIQFKGDEENCNLTDHLVDPDSQVDSNDAELEFMHSMAKTLSSFWFPIN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04616 204 Gene3D High mobility group box domain 105 161 IPR036910 -
Vifa1g04616 204 PANTHER PROTEIN YABBY 6-RELATED 2 166 IPR006780 GO:0007275
Vifa1g04616 204 SUPERFAMILY HMG-box 103 155 IPR036910 -
Vifa1g04616 204 FunFam Axial regulator YABBY 4 102 169 - -
Vifa1g04616 204 Pfam YABBY protein 11 160 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04616 Vifa-Chr1 723399858 723401224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04616 2 155 C2C2-YABBY Transcription Factor Family AT1G23420 66.864 4.84e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vifa1g04616 YABBY 1.9e-61 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04616 K25796 - gmx:100804172 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04616 1 723399858 723401224 Vifa1g04616 1 723399858 723401224 ECH