Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04613 ATGAGAAGAAGAATCAAAGAACTTCTACGCCTCTCATTTTCATCTCTACACTCTAAAATTCACAACCAACCACTCTCAAAATCACTACAACCCACCATTTCTTCTCAATGTTCAACATCTTTCTCAACGTTTTCAAAATCCCAAAGAGAATCACTGATTTTACAACAGTTCAAAGAAAGGAAACTCAAAGGGTCATCAAAAGACTCAATTTTTATTCCAAAAGTTTCAAATTCCGTTCCAGAAAGTTTTGATACTAATGTTGAGAAAACAGTTCAAAAGGGTTTGAAAAGTGAGAGTGAAAATGAAGATTCTATGGTGGTTGCTAACTTTAAGAAGTTGGGTTTGAGTGACGTTCTTGTTGAGGTTATGGAAGAGATTGGTGATTTTGTTCCGAGTGAGATACAGTGTGTTGTTATTCCAACTATTTTGGAAGGGAAGAGTTTGCTGTTGAGTTCACCTTCTCAACCTGATAGAACATTGGCCTATTTGTTGCCCCTTATTCAGTTGCTAAGACGAGATAGAGAGTTGCTTGGTTCTAATTCAAAGCATCCTCCAGCCGTTGTGCTTTGTGCTTCTGAGGAGAAAGTTGAACAGTGCTTTAATGCGGCAAGATATATCATCCATAATGCAGAATTGAAGTCTGCAAAAAATCGTGCTTCATCAAATAACGAAAAGTCGAATTCCTCAATTGGCTTAATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGATGAAGGGATTGTTGTTCCTGCAGAATTGAAATACTTGGTATTGGATGAAGCCGATTCCATGCTTGGTAACCGCCTTGGTTCTGAAATCCATAAAATTATCAGACCATTACAACATCATGACTCAAAATCCAAAGTCAAAAGATTGCAGACAATTTTGGCAATTTCAACTATAGCTGAGGTTTTGGGTGAAAAGTCGGCCATTGTGGAACGTCTTGAGAGCGATCATGCCGGAAATATATCTGCATTGTCTATAGAAATGGAGGAAGCAGAAGTTTTTCATTTGACAGAGTCTCTGGATGCACTTAAGAAAAAATTGGAGGAGGCCATGAATTCCCTTTAG 1074 0.379 MRRRIKELLRLSFSSLHSKIHNQPLSKSLQPTISSQCSTSFSTFSKSQRESLILQQFKERKLKGSSKDSIFIPKVSNSVPESFDTNVEKTVQKGLKSESENEDSMVVANFKKLGLSDVLVEVMEEIGDFVPSEIQCVVIPTILEGKSLLLSSPSQPDRTLAYLLPLIQLLRRDRELLGSNSKHPPAVVLCASEEKVEQCFNAARYIIHNAELKSAKNRASSNNEKSNSSIGLMIGTPCEILQYIDEGIVVPAELKYLVLDEADSMLGNRLGSEIHKIIRPLQHHDSKSKVKRLQTILAISTIAEVLGEKSAIVERLESDHAGNISALSIEMEEAEVFHLTESLDALKKKLEEAMNSL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04613 357 Coils Coil 329 357 - -
Vifa1g04613 357 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 46 303 - -
Vifa1g04613 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 298 IPR027417 -
Vifa1g04613 357 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 246 357 IPR002004 GO:0003723
Vifa1g04613 357 Gene3D - 74 307 IPR027417 -
Vifa1g04613 357 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 139 320 IPR014001 -
Vifa1g04613 357 Pfam DEAD/DEAH box helicase 133 298 IPR011545 GO:0003676|GO:0005524
Vifa1g04613 357 SUPERFAMILY PABC (PABP) domain 305 355 IPR036053 GO:0003723
Vifa1g04613 357 Gene3D - 308 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04613 Vifa-Chr1 722475801 722478137 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04613 292 357 Eukaryotic Initiation Factors Gene Family AT2G23350 40.000 6.02e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04613 - - gmx:100800575 449.899