Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04606 ATGGCGAGTGTTAGCGGAAGAATCCTCTTCTCCCTCTCTTCTTCCATAACCAGACGCCTTCGTGGTAAACGCTTCTCATTCTTCACACTCTCAAACCCTACCATCATTTCCCCACGATTCAGACCTCTCTGTTCCATAACTGCTTCACCCGAAGTTCTATTAGACACCGACACTGAAAAACACTCGATTCTTCTCGAGAAGCTGAGAGTTAGACATCTAAAAGGAAGTGCTACAAAACCGGCTTCTGAAATTGTGAAGAAATCTGAGGGGAAGGAGGGGAAGAAGAAGGAGGCTGTTGTTGTTGATGTTGGAAGTTTTGGGGAATTGGGGATTAGTGATGAGGTTATGGGGGCTGTTAAAGAAATTGGGATTGAAGTTCCTACTGAGATACAGTGTATTGGTATTCCTGCGGTTTTGGAGGGGAAAAGTGTTGTGTTAGGGTCTCATACTGGTTCTGGAAAAACTCTTGCTTACTTGCTTCCACTTGTTCAGTTGCTAAGACGAGATGAGCAGTTGAATGGACTAGTTTTGAAGCCCAAGCGTCCCCGAGCTGTTGTGCTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCGCGATTCAGGTGCACCATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCACTTAGTAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAACATATTGAGGAGGGAAATATGGTATACGGTGACATCCAATACTTGGTATTAGACGAGGCAGACACGATGTTTGATCGGGGATTTGGTCCTGATATTCGCAAGTTCATAGCCCCATTAAAACAGCGTGCTTCTAAACCTGATAGCCTAGGTTTCCAGACTGTTTTGGTTACTGCAACCATGACAAAGGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGCATTGTCCATCTGCGCACTTCCACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTCTTAAACTTTCTGGTTCTGAGAATAAGCTGGATGCATTACTTCAGGTATTAGAGCCAAGTCTTGCCAAGGGTAACAGGGTAATGGTTTTCTGCAACACATTGAATTCTAGCCGTGCTGTGGATCACTTTCTTGGTGAAAATCTGATTTTTACTGTGAATTACCACGGGGAGGTACCGGCAGAGCAAAGGGTTGAAAACCTCAACAAGTTTAAGAGTAACACTGGAGATTGCCCTACATTGGTTTGCACAGACTTGGCTGCTAGGGGTTTGGACTTAGATGTCGATCATGTTATCATGTTTGATTTCCCTCTGAATTCTATCGACTACCTCCATCGCACAGGTAGAACTGCTCGTATGGGTGCTAAAGGGAAAGTAACAAGTTTGGTTACTAAAAAGGACTTCGGCTTGGCAACCAAAATAGAGGAGGCGATAAGAAAGAATGAAAGTTTGGAGGCTATCACTAAAGAAAGTCTCCGAATGGACGTAACCAGGAACCAAATCACTGAGCAAAGAAGAAAGAACAAAAATGTGGTCAAAACTTCAAAAGCTAGAGACAAATCTGATTCTCGCCCAACTTCTACCACTAACAGGTCAGGTATTAGGGACAAATCAGATTCGCGCTCCAGTTCTGCAAATACCAGGTCACGTATTAGGGACAAATCTGATTCGCGCACCAGCTCTACAAACGCTAGGTCAGGTATTAGGGGCAAATCTGATTCTCGCACCAGTTCTGAGAATACCAGGTCACGTATTAGGGACAAATCTGATTCGCGCACCGGTTCTGGGAATACCAGGTCAGACATGAAATTTGGTAAACAATCATCGCCGTCAAAGTCTTCAAAGAAAGGATTTCCCGTTTCAAAATCTGTAAAATCGTCCAGTCCAAATAGCTTCATAAAAGCTTCTTCGGAGAGTAAGCGAACGGGTAAAAGGGCCACTGTCACCAAATCTACAAATCCTAAACTCAGTGTTGTCGGGTTTAGGGGGCGGCGTTCATCATCATCAGATAAGAGACAAACATTTTAG 2040 0.4431 MASVSGRILFSLSSSITRRLRGKRFSFFTLSNPTIISPRFRPLCSITASPEVLLDTDTEKHSILLEKLRVRHLKGSATKPASEIVKKSEGKEGKKKEAVVVDVGSFGELGISDEVMGAVKEIGIEVPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGLVLKPKRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLSNPIDMVVGTPGRILQHIEEGNMVYGDIQYLVLDEADTMFDRGFGPDIRKFIAPLKQRASKPDSLGFQTVLVTATMTKAVQNLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGSENKLDALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENLIFTVNYHGEVPAEQRVENLNKFKSNTGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDFGLATKIEEAIRKNESLEAITKESLRMDVTRNQITEQRRKNKNVVKTSKARDKSDSRPTSTTNRSGIRDKSDSRSSSANTRSRIRDKSDSRTSSTNARSGIRGKSDSRTSSENTRSRIRDKSDSRTGSGNTRSDMKFGKQSSPSKSSKKGFPVSKSVKSSSPNSFIKASSESKRTGKRATVTKSTNPKLSVVGFRGRRSSSSDKRQTF 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04606 679 MobiDBLite consensus disorder prediction 538 563 - -
Vifa1g04606 679 Gene3D - 333 566 IPR027417 -
Vifa1g04606 679 SMART helicmild6 376 458 IPR001650 -
Vifa1g04606 679 SMART ultradead3 123 332 IPR014001 -
Vifa1g04606 679 MobiDBLite consensus disorder prediction 564 578 - -
Vifa1g04606 679 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 75 493 - -
Vifa1g04606 679 CDD DEADc 115 314 - -
Vifa1g04606 679 Gene3D - 69 323 IPR027417 -
Vifa1g04606 679 MobiDBLite consensus disorder prediction 579 598 - -
Vifa1g04606 679 MobiDBLite consensus disorder prediction 503 529 - -
Vifa1g04606 679 Pfam Helicase conserved C-terminal domain 347 458 IPR001650 -
Vifa1g04606 679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 322 IPR014001 -
Vifa1g04606 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 470 IPR027417 -
Vifa1g04606 679 Pfam DEAD/DEAH box helicase 128 311 IPR011545 GO:0003676|GO:0005524
Vifa1g04606 679 MobiDBLite consensus disorder prediction 599 641 - -
Vifa1g04606 679 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Vifa1g04606 679 MobiDBLite consensus disorder prediction 502 679 - -
Vifa1g04606 679 CDD SF2_C_DEAD 335 467 - -
Vifa1g04606 679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 499 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04606 Vifa-Chr1 721870369 721878355 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04606 103 480 Eukaryotic Initiation Factors Gene Family AT3G19760 29.765 1.70e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04606 - - psat:127127975 1136.32