Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04604 ATGAGAGAAGAAGATAATTCCTCCGATCATAGTAGTGTCGAATTCATCATGAAAGATCACCACCATCAACATCAACCTCCATCTTCTTCTTCTCTTCCCGGAAAAAAGAGAAAAGAAACCGAATCATCATCATCAGGTATCATCAACAACGATAACAACAACACTCCTCGTGCTTGTACTGAATGCGGCAAGAAATTCTGGTCATGGAAAGCTCTTTTCGGTCACATGCGCTGTCATCCTGAACGTCAATGGCGCGGTATCAATCCTCCTCCAAATTTCCGACGACACCAACAACAGCATTATCGACAACAACCGCATACTCACAGTCACAGTCATAGTTACGGTACTACTTCTTCCATGACGCCGGAAGATCACGAAGTTGCTGCTTGTTTGCTTTTACTTGCAAATTCAAATTCGAAGATGAACAACAACAGTATCAACAAAACGGCGAAGCTTAAGGCGGTTGCGGCGGTTACTACGGTTGGTACTACGGTGGATGATTCATCTTCGGTTATGGATCAAGAGAATAATAATAATGCTCATTTTGTGTGTTCGTGTTGTAACAAGGTGTTTGGATCGCATCAGGCTCTTGGAGGACACAGAGCAAGTCACAAGAATGTGAAAGGCTGTTTCGCCAATACAACAACTTCTTCACCACCACCACCAACAACAACAGTAACCGCTTCCGGTAGTAGGATGCTGACGTGGACACAACAAACTCAAGGCGGAGGAGGAGATCATGCTTTTGTTAGTGGTGGTGATCATGACGAATATAACCACCACCAGGCGATGGTGAATTTGATGACGGTGCCGCGTGACGGTTACAATGCTGACGTGGAAGGGGAAACGGTTATTGAGAGTAGTGGAGGAGGGGGAGGACATAAGTGTGGTATATGTTTGAGGGTATTTACAACTGGACAAGCACTTGGTGGACATAAGAGGTGTCATTTTGATTCATCTAATTCCATTGCTGCAACGACTTCTAACAAATCATCATCATCTCTTAATGTTGATTTGAATTTCCCTTTTCCACCTCTTCCTCCTCCACCTCCTGATGGTGCTGATCCTCCTCTCACTCTTGATTTAAAGTTAGGACTTTGA 1101 0.4423 MREEDNSSDHSSVEFIMKDHHHQHQPPSSSSLPGKKRKETESSSSGIINNDNNNTPRACTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRHQQQHYRQQPHTHSHSHSYGTTSSMTPEDHEVAACLLLLANSNSKMNNNSINKTAKLKAVAAVTTVGTTVDDSSSVMDQENNNNAHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTSSPPPPTTTVTASGSRMLTWTQQTQGGGGDHAFVSGGDHDEYNHHQAMVNLMTVPRDGYNADVEGETVIESSGGGGGHKCGICLRVFTTGQALGGHKRCHFDSSNSIAATTSNKSSSSLNVDLNFPFPPLPPPPPDGADPPLTLDLKLGL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04604 366 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vifa1g04604 366 MobiDBLite consensus disorder prediction 341 356 - -
Vifa1g04604 366 Pfam C2H2-type zinc finger 59 81 - -
Vifa1g04604 366 Pfam C2H2-type zinc finger 181 205 - -
Vifa1g04604 366 Pfam C2H2-type zinc finger 294 316 - -
Vifa1g04604 366 ProSitePatterns Zinc finger C2H2 type domain signature. 296 316 IPR013087 -
Vifa1g04604 366 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Vifa1g04604 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Vifa1g04604 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Vifa1g04604 366 SMART c2h2final6 294 316 IPR013087 -
Vifa1g04604 366 SMART c2h2final6 182 204 IPR013087 -
Vifa1g04604 366 SMART c2h2final6 57 79 IPR013087 -
Vifa1g04604 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 321 IPR013087 -
Vifa1g04604 366 MobiDBLite consensus disorder prediction 1 55 - -
Vifa1g04604 366 SUPERFAMILY beta-beta-alpha zinc fingers 54 82 IPR036236 -
Vifa1g04604 366 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g04604 366 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 25 365 - -
Vifa1g04604 366 MobiDBLite consensus disorder prediction 86 121 - -
Vifa1g04604 366 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04604 Vifa-Chr1 721769990 721771090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04604 57 366 C2H2 Transcription Factor Family AT4G35280 39.297 7.88e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g04604 zf-C2H2_6 6.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04604 - - psat:127120980 450.669