Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04604 | ATGAGAGAAGAAGATAATTCCTCCGATCATAGTAGTGTCGAATTCATCATGAAAGATCACCACCATCAACATCAACCTCCATCTTCTTCTTCTCTTCCCGGAAAAAAGAGAAAAGAAACCGAATCATCATCATCAGGTATCATCAACAACGATAACAACAACACTCCTCGTGCTTGTACTGAATGCGGCAAGAAATTCTGGTCATGGAAAGCTCTTTTCGGTCACATGCGCTGTCATCCTGAACGTCAATGGCGCGGTATCAATCCTCCTCCAAATTTCCGACGACACCAACAACAGCATTATCGACAACAACCGCATACTCACAGTCACAGTCATAGTTACGGTACTACTTCTTCCATGACGCCGGAAGATCACGAAGTTGCTGCTTGTTTGCTTTTACTTGCAAATTCAAATTCGAAGATGAACAACAACAGTATCAACAAAACGGCGAAGCTTAAGGCGGTTGCGGCGGTTACTACGGTTGGTACTACGGTGGATGATTCATCTTCGGTTATGGATCAAGAGAATAATAATAATGCTCATTTTGTGTGTTCGTGTTGTAACAAGGTGTTTGGATCGCATCAGGCTCTTGGAGGACACAGAGCAAGTCACAAGAATGTGAAAGGCTGTTTCGCCAATACAACAACTTCTTCACCACCACCACCAACAACAACAGTAACCGCTTCCGGTAGTAGGATGCTGACGTGGACACAACAAACTCAAGGCGGAGGAGGAGATCATGCTTTTGTTAGTGGTGGTGATCATGACGAATATAACCACCACCAGGCGATGGTGAATTTGATGACGGTGCCGCGTGACGGTTACAATGCTGACGTGGAAGGGGAAACGGTTATTGAGAGTAGTGGAGGAGGGGGAGGACATAAGTGTGGTATATGTTTGAGGGTATTTACAACTGGACAAGCACTTGGTGGACATAAGAGGTGTCATTTTGATTCATCTAATTCCATTGCTGCAACGACTTCTAACAAATCATCATCATCTCTTAATGTTGATTTGAATTTCCCTTTTCCACCTCTTCCTCCTCCACCTCCTGATGGTGCTGATCCTCCTCTCACTCTTGATTTAAAGTTAGGACTTTGA | 1101 | 0.4423 | MREEDNSSDHSSVEFIMKDHHHQHQPPSSSSLPGKKRKETESSSSGIINNDNNNTPRACTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFRRHQQQHYRQQPHTHSHSHSYGTTSSMTPEDHEVAACLLLLANSNSKMNNNSINKTAKLKAVAAVTTVGTTVDDSSSVMDQENNNNAHFVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTSSPPPPTTTVTASGSRMLTWTQQTQGGGGDHAFVSGGDHDEYNHHQAMVNLMTVPRDGYNADVEGETVIESSGGGGGHKCGICLRVFTTGQALGGHKRCHFDSSNSIAATTSNKSSSSLNVDLNFPFPPLPPPPPDGADPPLTLDLKLGL | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04604 | 366 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Vifa1g04604 | 366 | MobiDBLite | consensus disorder prediction | 341 | 356 | - | - | |
Vifa1g04604 | 366 | Pfam | C2H2-type zinc finger | 59 | 81 | - | - | |
Vifa1g04604 | 366 | Pfam | C2H2-type zinc finger | 181 | 205 | - | - | |
Vifa1g04604 | 366 | Pfam | C2H2-type zinc finger | 294 | 316 | - | - | |
Vifa1g04604 | 366 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 296 | 316 | IPR013087 | - | |
Vifa1g04604 | 366 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 184 | 204 | IPR013087 | - | |
Vifa1g04604 | 366 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 84 | IPR013087 | - | |
Vifa1g04604 | 366 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 182 | 209 | IPR013087 | - | |
Vifa1g04604 | 366 | SMART | c2h2final6 | 294 | 316 | IPR013087 | - | |
Vifa1g04604 | 366 | SMART | c2h2final6 | 182 | 204 | IPR013087 | - | |
Vifa1g04604 | 366 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Vifa1g04604 | 366 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 294 | 321 | IPR013087 | - | |
Vifa1g04604 | 366 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Vifa1g04604 | 366 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 82 | IPR036236 | - | |
Vifa1g04604 | 366 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vifa1g04604 | 366 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 25 | 365 | - | - | |
Vifa1g04604 | 366 | MobiDBLite | consensus disorder prediction | 86 | 121 | - | - | |
Vifa1g04604 | 366 | MobiDBLite | consensus disorder prediction | 327 | 356 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04604 | Vifa-Chr1 | 721769990 | 721771090 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g04604 | 57 | 366 | C2H2 Transcription Factor Family | AT4G35280 | 39.297 | 7.88e-53 | 175 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g04604 | zf-C2H2_6 | 6.8e-09 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04604 | - | - | psat:127120980 | 450.669 |