Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04580 ATGGATTTGGATTTCTCTCAAAACACACTTGCAATTGTTCTCCTTTCAACAATCCCTCTCTTCATAATTCTCTTCCATCACTCCAAAACCAAACAACCTCCAATGGTTGCTGGTGCATGGCCAATAATTGGCCACCTTCCCCTCTTAACGAAATCTCAACCAACTCATCATTTTCTAGGTGCCTTGGCAGACAAGTATGGTCCTATTTTCACCATCAAACTCGGCGCAGCGAAAACTCTAGTAATCAACAATTGGGAAACTGCGAAAGAGTGTTACACAACAAACGACATTGTTGTGTCTTATCGCCCAAACCTAGTTGCACTTGAACACATGACATATAATCATGCAATGTTCGGTTTTGCACCTTATGGTCCCTATTGGCGCGAAATGCGCAAGATCGTTACGCATAATTTTCTCTCGAACCATCGGCTCGATCTATTAACTCATCTTCGTGTCTCTGAAGTTGAAACTTCGATTAAAGAGCTCTTTAATTTATGGACAAATGAAAAAGACCAAAATGGATATTTGTTGGTGGAGATGAAGAAGTGGTTTCATGAAGTAGCTTTTAATGTTGCTCTTAGAATGTTTGTTGGAAAGAGATATTTTGGAGAGAATGTGGTAGTTAAAGAGGAAGAAGCTACTAGGTGTTTGAAAGCTTTGAGGGATTATATGCGTTTGATTAGTGTGTTTACGGTTGGTGATGTTATTCCTTGGTTGAGGTGGTTTGATTTTGGTGGAAATGAAAAGAATATGAAGGAAAATTTTGAGAAATTGGATGTTGTTGTGACTGAATGGTTGGATGAGCATAAGAAGAAGAGGGTTGATGATAAGAGTAAAGGTGATCATGATTTTATGGATGTGATGCTTTCTACTATTGATGGATCAAACATTCATGGATTTGATTCTGATTCTGTCATAAAAGCCACAACACTGGCACTAATTTTGGGAGCAACAGACACAACTAGTGTTACACACACATGGGCATTGTGTTTATTATTAAACAATCCACACACATTGGAAAAGGTAAAAGAAGAAATTGATCTCCACATTGGCAAAGAGAGACTATGCATTACAGAATCAGATATAAACAAGTTGGTTTACCTTCAAGCTGTTGTCAAAGAAACACTAAGGCTTTATCCAGCATCACCTCTGTCGGGAATTCGCGAATTCAGCCAAGATTGCAACATTGGTGGCTACCGTGTGAAGAAAGGAACCCGATTATTCACAAACTTGTGGAAGATTCAAACCGATCCTAGTGTTTGGTCGGATCCATTGGAGTTCAAGCCCGAGAGGTTTCTTACTACTCATAAAGATGTTGATGTTAAGGGTCATCATTTCGAGTTTTTACCGTTTGGAAGTGGAAGAAGAATTTGTCCTGGACTATCGTTTGGCCTTCGAACGGCTTTTCTGACTCTTGCGAATTTTATTCACGCCTTTGAAATCTCGAAAACTTCAAGTGATCCGGTTGATATGACTGCTGTTGTGGAAACATCCAACATCAAAGTTACTCCTCTTGAAGTTCTCATCAAACCTCGTTTGTCTTTTAATTATTATGAAACGGTGTGA 1566 0.3914 MDLDFSQNTLAIVLLSTIPLFIILFHHSKTKQPPMVAGAWPIIGHLPLLTKSQPTHHFLGALADKYGPIFTIKLGAAKTLVINNWETAKECYTTNDIVVSYRPNLVALEHMTYNHAMFGFAPYGPYWREMRKIVTHNFLSNHRLDLLTHLRVSEVETSIKELFNLWTNEKDQNGYLLVEMKKWFHEVAFNVALRMFVGKRYFGENVVVKEEEATRCLKALRDYMRLISVFTVGDVIPWLRWFDFGGNEKNMKENFEKLDVVVTEWLDEHKKKRVDDKSKGDHDFMDVMLSTIDGSNIHGFDSDSVIKATTLALILGATDTTSVTHTWALCLLLNNPHTLEKVKEEIDLHIGKERLCITESDINKLVYLQAVVKETLRLYPASPLSGIREFSQDCNIGGYRVKKGTRLFTNLWKIQTDPSVWSDPLEFKPERFLTTHKDVDVKGHHFEFLPFGSGRRICPGLSFGLRTAFLTLANFIHAFEISKTSSDPVDMTAVVETSNIKVTPLEVLIKPRLSFNYYETV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04580 521 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 369 387 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 410 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 187 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 SUPERFAMILY Cytochrome P450 38 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Vifa1g04580 521 Gene3D Cytochrome P450 26 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04580 521 FunFam Cytochrome P450 82C4 25 510 - -
Vifa1g04580 521 PANTHER CYTOCHROME P450 82C3-RELATED 17 518 - -
Vifa1g04580 521 CDD CYP82 67 512 - -
Vifa1g04580 521 Pfam Cytochrome P450 38 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04580 Vifa-Chr1 716631973 716634117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04580 20 518 Cytochrome P450 AT4G31970 46.169 3.05e-167 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04580 - - gmx:100802193 740.725