Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04572 ATGTTTAAGACGATTAAAAGAAAGCCGAAATTCGATGCATATGACAGAAGTGGTGAAATCTTGGAGGACATAAAGGGAGATATTGAACTCAAAGATGTTTACTTCAGATACCCTACGAGGTCGGACGTGCATATATTTACTGGATTTTCATTGTTTGTTCCAAGTGGCACAACTACTGCTTTTGTGGGTCAAAGTGGAAGTGGAAAGCCTACTGTGATCAATTTATTGGAAAGATTCTATGATCTTGATGCTGGAGAAGTACTTATAGATGGTGTGAATTTGAAGAACTTGCAACTTAAATGGATAAGGGATCAGATTGGGTTGGTTAGTCAAGAACCTATATTGTTTACTACTACTATCAGAGAGAACATGGCGTACGGGAAAGAAGGTGCAACTGATGAGAAGATAACAGCGGCAATAACACTTGCTAATGCAAAAAAGTTCATCAACAAACTGCCTCAGGGCCTCGACACCATGGCGAGACAAATTTGTGATAGTTGA 501 0.3932 MFKTIKRKPKFDAYDRSGEILEDIKGDIELKDVYFRYPTRSDVHIFTGFSLFVPSGTTTAFVGQSGSGKPTVINLLERFYDLDAGEVLIDGVNLKNLQLKWIRDQIGLVSQEPILFTTTIRENMAYGKEGATDEKITAAITLANAKKFINKLPQGLDTMARQICDS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04572 166 Pfam ABC transporter 49 150 IPR003439 GO:0005524
Vifa1g04572 166 PANTHER ABC TRANSPORTER B FAMILY 1 160 IPR039421 -
Vifa1g04572 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 160 IPR027417 -
Vifa1g04572 166 Gene3D ABC transporter type 1, transmembrane domain 1 17 IPR036640 GO:0005524|GO:0016020
Vifa1g04572 166 Gene3D - 18 159 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04572 Vifa-Chr1 715795097 715795671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04572 1 158 Calmodulin-binding Proteins AT2G36910 51.899 1.14e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04572 K05658 - gmx:100801771 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04572 1 715795097 715795671 Vifa1g04572 1 715795097 715795671 ECH