Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04571 ATGGAGGAAATGTACGGAGTACCTACAACGGTGGAGTACGGTGACAAAACACTGATGACACCGGAGAATCTGATTTTCCCGACGGACTACAACACCTTCCTCATGTCCACTTCATCTACCGGCCGAATTCCAATGTTCGGATCCGATGATATCTTCACGGCGGAACCTTCTTCCGCCGGAATTCAAGATGACGTGGCATCTAGTGTTATGAAAGCCAAAATCGCTTCTCATCCTTATTATCCTCGCCTCCTTCAAGCTTACATCGATTGTCAGAAGGTTGGTGCTCCACCTGAAATAGCGCGTTTGTTGGAGGAAATTCGTAGAGAGAATGATCAGTGTAAAAGAGACGTTGTTGTTTCCACGTGTTTTGGAGCCGATCCCGAGCTTGACGAATTTATGGAAACTTACTGTGATATGCTTGTGAGGTATAAATCAGACCTTACTCGTCCTTTTGATGAAGCTAAGACGTTTCTCAACAAGATCGAAACGCAACTCAGTCATCTCTGCACTGGTGGTGGTGCTTCAGTTCCAACTCCTTCTGATGATGCTGGTGCATCTTCGGAAGAAGAAGATCTTAGTACTGGAGATGATGTTCAAGATGGACAATCAAAGAGTGAGGATCGCGAGCTCAAAGACAGACTTTTACGCAAGTTTGGAAGTCATATTGGTACATTAAAATTGGAGTTTTCCAAGAAGAAAAAGAAGGGCAAGCTTCCAAAGGAAGCAAGACAAACACTACTTCAATGGTGGAATGTTCATTACAAATGGCCATACCCAACGGAAGCTGATAAGATTGATCTGGCCAAGACAACAGGGCTGGACCAAAAGCAAATTAACAATTGGTTTATAAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATTTTACAGGACGGTTCCTTACTGAAGAATGA 939 0.4302 MEEMYGVPTTVEYGDKTLMTPENLIFPTDYNTFLMSTSSTGRIPMFGSDDIFTAEPSSAGIQDDVASSVMKAKIASHPYYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDQCKRDVVVSTCFGADPELDEFMETYCDMLVRYKSDLTRPFDEAKTFLNKIETQLSHLCTGGGASVPTPSDDAGASSEEEDLSTGDDVQDGQSKSEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIDLAKTTGLDQKQINNWFINQRKRHWKPSENMQFSMMENFTGRFLTEE 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04571 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 300 - -
Vifa1g04571 312 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Vifa1g04571 312 SMART KNOX2_2 119 170 IPR005541 GO:0003677|GO:0005634
Vifa1g04571 312 Pfam KNOX2 domain 123 169 IPR005541 GO:0003677|GO:0005634
Vifa1g04571 312 Pfam ELK domain 209 230 IPR005539 GO:0003677
Vifa1g04571 312 SUPERFAMILY Homeodomain-like 230 303 IPR009057 -
Vifa1g04571 312 Pfam KNOX1 domain 70 111 IPR005540 GO:0003677|GO:0005634
Vifa1g04571 312 CDD homeodomain 241 293 IPR001356 GO:0003677
Vifa1g04571 312 Gene3D - 228 302 - -
Vifa1g04571 312 SMART HOX_1 231 296 IPR001356 GO:0003677
Vifa1g04571 312 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Vifa1g04571 312 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Vifa1g04571 312 SMART KNOX1_2 68 112 IPR005540 GO:0003677|GO:0005634
Vifa1g04571 312 MobiDBLite consensus disorder prediction 170 210 - -
Vifa1g04571 312 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Vifa1g04571 312 SMART ELK_2 209 230 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04571 Vifa-Chr1 715765833 715773811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04571 1 312 Homeobox Transcription Factor Family AT1G23380 61.934 2.10e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa1g04571 KNOX2 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04571 - - gmx:100785764 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04571 1 715765833 715773811 Vifa1g04571 1 715765833 715773811 ECH