Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04570 ATGTTCATGTTTCGTTTGATCATCATTTCATTTTTATTTCTAGCATTAAGAGTTGACAAGGCTAATGCTCAACTATCTTATAGAAAATTCGGAAATAAATTGTTGCCTTACTCAGAAATATTGGTCGATCGATCTGGACATGGAAATTTTACTACCATTCAATCGGCAATCAACTCAATTCCGTCTAACAATAAGTATTGGACGACTATTAGGATTAAAGCGGGTAACTATATAGAAAAAGTAATCATTCCAAAAGACAAGTCTTATATCTTATTGAAAGGATCAGGAAAGAGTAAAACTTTGGTTGAGTGGGATGACCATTCAGATTTAAAAATTCCTACATTTTCATCATTGGCTGACAATATTATTGTCAAATCTATAAGTTTTAGGAACTCATACAACAATCCAATAAATAACAAACCTAAGATACCTGCAATAGCTGCAAAGGTAAGTGGTGACAATACCTATTTTTTCAGAGTTGGTTTTTATGGTTATCAAGACACTTTGTATGATGCCAAAGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTGTAGATTTTATCTTTGGTGCAGGACAATCTTTGTTTGAGAGGTGTTCCATAAATGTTATTGGTGATGGTTATATAACAGCACAAGGTAGAGAAAGTCCAAATGACTCTAATGGGTTTGTTTTCAAAGACTCTCATGTGTTTGGAAATGCTACCACTTATTTAGGAAGAGCTTGGAGACAATATGCAAGAGTCTTATTTTACAATACTAACTTGACAAATGTTATACAACCATTGGGTTGGGATTCATGGAATTTTAACACTCATGAGAATCTAATAACTTTTGTAGAGTATGGGAATTTTGGACCTGGTGCTGATACATCAAAACGAGTGGATTGGGTTAATAAACTTGATAAAACAACCATTGAGAATATGGCAAGTGTGAACTTCATTGATGACAAGAAAGAATGGATTGATAATCAACCTTACTAA 987 0.3354 MFMFRLIIISFLFLALRVDKANAQLSYRKFGNKLLPYSEILVDRSGHGNFTTIQSAINSIPSNNKYWTTIRIKAGNYIEKVIIPKDKSYILLKGSGKSKTLVEWDDHSDLKIPTFSSLADNIIVKSISFRNSYNNPINNKPKIPAIAAKVSGDNTYFFRVGFYGYQDTLYDAKGRHYYKLCTIQGAVDFIFGAGQSLFERCSINVIGDGYITAQGRESPNDSNGFVFKDSHVFGNATTYLGRAWRQYARVLFYNTNLTNVIQPLGWDSWNFNTHENLITFVEYGNFGPGADTSKRVDWVNKLDKTTIENMASVNFIDDKKEWIDNQPY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04570 328 FunFam Pectinesterase 36 327 - -
Vifa1g04570 328 Pfam Pectinesterase 40 318 IPR000070 GO:0030599|GO:0042545
Vifa1g04570 328 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Vifa1g04570 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 38 324 - -
Vifa1g04570 328 SUPERFAMILY Pectin lyase-like 39 323 IPR011050 -
Vifa1g04570 328 Gene3D - 37 328 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04570 Vifa-Chr1 715697000 715698813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04570 2 275 Carbohydrate Esterase AT2G19150 41.343 3.30e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04570 - - mtr:11439145 458.759