Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04567 ATGAAGAAAGCAATCCCTCTCATTTTCTCTCAATGCCTCACAAACCTTCTCATCACGTTTGCATTACTATCACAAACTGTAATGGCAGAACCAAGAGCCAAGACAGTTCTGATAGCATGTGGTAATCAACTAGAACACAACACAACCATCTTCGTTCCGAATTTTGTCGCAACAATGGTGAATATCAGCGAGCAGATGCGTAGTACCGGCTTCGGCACAGCAGTTACAGGAACAGGAGCTGATACTAACTATGGCCTAGCACAATGCTATGGAGATCTTTCATTACTTGACTGTGTGTTGTGTTATGCCGAGGCACGCACAGTTCTTCCACAGTGCTTCCCTTATAACTCCGGTCGCATTTACCTCGACGGTTGTTTCATGAGGTCTGAGAATTATAGTTTTTTTAATGAGTATAAAGGACCCGGAGATAGAGCTGTGTGTGGGAACACAACTACGAAGAACTCGGATTTTCGAGCAGCAGCAAAGCAAGCAGTGCTAAGAGCAGTTGAAGACGCAGTGGAAAATAAAGGCTATGCCAGAGGGAAAGTTGTTGTATCAGAAGCAGCAAATGAATCTGCTTATGTTCTAGCTGATTGTTGGAGGAATTTAAACTCTCGGTCTTGCAAAGCATGTCTTGAGCATGCATCGTCGTCGATATTGAGATGCCTGCCTTCGTCAGAAGGACGAGCACTCAATACCGGATGCTTCATGAGGTACTCCGACACTGATTTTCTTAACGAAGAAGTCGAAAATAGGAGTTCAGGAGGTAATGTGCTAGTAATAGTCATTGCAGTAGTCAGTTCGGTGATCGTTGCGGTGGTTGGAGTGATTATAGGAGCTTATATCTGGAAACAAAGATACATTCAAAAGAAAAGAAGAGGATCAAATGATGCAGAAAAGTTAGCAAAGACTCTTCATGAAAAAAGCTTGAACTTCAAGTACTCTACATTGGAAAAAGCTACTGAATCTTTTAATGACAACAACAAGTTAGGGCATGGAGGATTTGGAACAGTTTATAAAGGAGTTCTACCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACACAGAGCAGCAGATTTCTACAACGAAGTCAACATAATTAGCGGTGTCGAACACAAGAATCTAGTTAGACTATTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTTTACGAATATATGCACAACAAAAGTCTCGATCGCTTCATTTTTGATAAAAACAAGGGCAGAGAACTAAAATGGGAAAAGAGATATGAAATAATTATTGGGACGGCTGAAGGATTAGTTTACCTGCATGAGAACTCCAAAGTCAGGATAATCCATAGAGATATAAAAGCCAGCAACATCCTATTGGATTCAAAGCTACGAGCTAAAATTGCAGATTTTGGTTTGGCCAGGTCCTTTCAAGAAGACAAAAGCCACATAAGTACAGCTATTGCAGGAACTTTAGGGTATATGGCTCCAGAGTATCTAGCTCATGGTCAATTAACAGAAAAAGCGGACGTATATAGTTTCGGAGTGTTACTGCTAGAGATAGTTACTGGAAGTCAGAACAACAGGAGCAAAGCATCAGAATATACAGACAGCTTAGTTATAGTGGCATGGAAGCATTTTCAGTCAGGGGCTTCCGAACAACTATTTGATCCAAATATAGAGTTGCACGATGATCACAATAGTGATGTTAAGAATGAGCTTTTAAGAGTGGTTCACATAGGACTTCTATGCACTCAAGAGGTCCCTTCATTACGACCAACTATGTCAAAGGCATTACAGATGCTTACCAAGAGTGAGGAGCCTCTCGTTGCTCCCTCGAATCCACCCTTCCTAGATGAGAGTACTATGGAACTCCATGACACAAGTGGTGACGCATTTTACCTCCCCAATGCAGCTGATTCAATTGCTACTATGTCTCATAGCTCTTTCTATCCCAGATGA 1953 0.4158 MKKAIPLIFSQCLTNLLITFALLSQTVMAEPRAKTVLIACGNQLEHNTTIFVPNFVATMVNISEQMRSTGFGTAVTGTGADTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNSGRIYLDGCFMRSENYSFFNEYKGPGDRAVCGNTTTKNSDFRAAAKQAVLRAVEDAVENKGYARGKVVVSEAANESAYVLADCWRNLNSRSCKACLEHASSSILRCLPSSEGRALNTGCFMRYSDTDFLNEEVENRSSGGNVLVIVIAVVSSVIVAVVGVIIGAYIWKQRYIQKKRRGSNDAEKLAKTLHEKSLNFKYSTLEKATESFNDNNKLGHGGFGTVYKGVLPDGREIAIKRLYFNNRHRAADFYNEVNIISGVEHKNLVRLLGCSCSGPESLLVYEYMHNKSLDRFIFDKNKGRELKWEKRYEIIIGTAEGLVYLHENSKVRIIHRDIKASNILLDSKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGSQNNRSKASEYTDSLVIVAWKHFQSGASEQLFDPNIELHDDHNSDVKNELLRVVHIGLLCTQEVPSLRPTMSKALQMLTKSEEPLVAPSNPPFLDESTMELHDTSGDAFYLPNAADSIATMSHSSFYPR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04567 650 Pfam Protein kinase domain 325 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04567 650 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Vifa1g04567 650 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Vifa1g04567 650 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Vifa1g04567 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vifa1g04567 650 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Vifa1g04567 650 Pfam Salt stress response/antifungal 49 132 IPR002902 -
Vifa1g04567 650 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Vifa1g04567 650 Gene3D Transferase(Phosphotransferase) domain 1 400 608 - -
Vifa1g04567 650 CDD STKc_IRAK 330 601 - -
Vifa1g04567 650 Gene3D - 33 134 IPR038408 -
Vifa1g04567 650 Gene3D - 144 244 IPR038408 -
Vifa1g04567 650 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Vifa1g04567 650 SUPERFAMILY Protein kinase-like (PK-like) 310 622 IPR011009 -
Vifa1g04567 650 FunFam Putative DUF26-domain receptor-like protein kinase family protein 292 399 - -
Vifa1g04567 650 FunFam Cysteine-rich receptor-like protein kinase 2 400 607 - -
Vifa1g04567 650 SMART serkin_6 324 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04567 650 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vifa1g04567 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 623 - -
Vifa1g04567 650 ProSiteProfiles Protein kinase domain profile. 324 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04567 Vifa-Chr1 714901862 714904473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04567 1 650 Receptor kinase-like Gene Family AT1G70520 66.309 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa1g04567 Pkinase 3.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04567 - - gmx:100305420 1068.91