Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04558 ATGTACCTTAATTTCCACTTTCTATTTTCAATTCTTCTCATCTTCACCACCGTCGTCACCGCCGTCAACCCCGGCACCACTCTCTCCGCTTCCAATACCAACCAATCATGGTCCTCCCCGTCTTCCCTTTTCTCCCTCCGCTTCCTCCCCGTCGATCCCCCAACCTCCCCTCCCACCTTCCTCGCCGCCATCGTCTACTCCGGCGGAGCTCCCATCGTCTGGACAGCCGGTAACTCCCTCCCCGTCGACTCCGGTGGCTCCCTTCAGTTCCTAACCAGCGGCTCCCTCCGTCTCGTCAACGGCTCCGGCACCACCGTCTGGGACTCCGGAACCGCCAACCTCAACGCCAAATCAGCCACAGTTGATGATAGCGGCAGATTGGTGATCTCGAATGGAACGAATGATATTTGGTCTAGCTTTGATCATCTTACAGATACTCTTTTGCCTTCTCAGAATTTCAGTGTTGGTAAGGTTTTGAAATCTGGTTCTTATTCGTTTAATTTATCGAATGTTGGGAATTTGAGTTTGTTTTGGAATGATAGTGTAAATTTTTGGAATCAAAGTTTGAATTCTACTGTGAATCAGAATTTGACTTCACCTGTTTTGAGTTTAACATCTATTGGGATTTTGCAACTTTCTGATGTGAATTTGAGTATTCCTGTTGTTATTGCTTATAGTAGTGACTATGCTGATGCTGGTAGTGGTGGGAGTGATGTTCTTAGGGTTTTGAAATTGGATAGTGATGGGAATTTGAGGATTTATAGTACTTCTCGAGGTAGTTCGAATCCGATTGTTCGATGGGCTGCTGTTCAAGATCAGTGTCAGGTTTATGCTTACTGTGGGAACTATGGGATATGCAGTTATAATAATACGAATCCTGTTTGCGGTTGTCCGTCGAAGAATTTTGAGATGGTTAGTGGTGTTAGGCAAGGGTGTAGGAGGAAAGTGAGCCTTGGTGATTGTCGAGGGAATGAAACTATGTTGTCGTTGGATCATACTCAGTTGTTGACTTATCCGCCGGATACTGAGTCGCAGACGTTTTTTATGGGTATATCGGCGTGTAGAGGAAATTGTCTCTCGGGTTCGGGTGCTTGTTTTGCTTCTACTTCTATGTCGGATGGGACGGGACTATGTTATATTAAGTCGGTGGATTTTGTGAGTGGTTATAATAGTCCTACATTGCCTAGTACTTCTTATGTCAAGGTTTGTCCGCCGTTGGATCCGAATCCGCCGCCATCTTTAGGGGAGACGGCGAGGGAGAAGAGTTCGAGAGTACCGGCTTGGGTTGTTGTGGCTGTTGTTTTGGGGACTCTTTTAGGCGTGGTTGCTATTGAAGGTTGTTTTTGGTTTTGGTGTTGTCGGAAAACTGCAAGGTTTGGTGTATTGTCGGCTCAGTACGCTCTTCTTGAGTATGCTTCTGGTGCGCCGGTTCAGTTCACGTACAAGGAGCTTCAGCGCTCGACGAAAGGGTTCAAGGAGAAGCTTGGAGCGGGTGGATTTGGGGCAGTGTATAGAGGTGTTCTTGTTAACAAAACTGTTGTTGCAGTGAAACAGCTTGAAGGAATTGAACAAGGTGAGAAACAGTTTAGGATGGAAGTTGCAACTATAAGCAGTACTCATCATCTTAATTTGGTGAGACTTATCGGTTTTTGCTCGGAGGGACGCCACAGGCTTTTAGTGTACGAGTTCATGAAAAACAGTTCGCTGGATAATTTTTTGTTCCCGAAAGAAGAGCAATCGGGAAAACAGTTGAATTGGGAGTATCGGTTCAATATCGCACTTGGCACTGCAAGAGGAATCACATACCTTCATGAGGAGTGTCGCGACTGCATTGTCCACTGTGATATCAAACCTGAAAACATTCTCTTGGACGATAATTATGTCGCTAAAGTCTCTGATTTCGGTCTTGCAAAGCTCGTTAACCCAAAAGACCATAGACACAGAACCTTGACAAGCGTGCGAGGAACAAGAGGATATTTAGCCCCTGAGTGGATTGCAAATCTTCGCGTAACATCCAAATCTGATGTTTACAGCTACGGCATGGTTTTGTTAGAGATTGTGAGCGGAAGGCGGAACTTTGATGTTTCCGACGAAACAAATCGGAAGAAATTCTCCATTTGGGCCTATGAAGAGTTTGAGAAAGGCAACATCAAAGGAATTTTGGATAAAAGGCTTGCAGATATAGAAATCGATATGGAGCAAGTTACAAGAGCGATTAAGGTATGCTTTTGGTGCATCCAAGAGCAGCCGTCGCAAAGACCGGTGATGAGCAAAGTTGTTCAAATGCTAGAAGGTGTAAAAGAAATTGACAAGCCTCCACCTCCTAAATTGGTTGTTGAAGGACCAGTTAGCGGAACCAGCACCTACATTAGTAGCAATGTTAGCGCGTTTACCACAATTGGAGCCTCGCCAAATGTTCCTTCTTCATCATCATCAATTCAAACTAGTGGTGTTTCAAACTTCGCCTTGGGAAGAAACCCTGAGAAGGCAACTTCATCCCTTTTACAGTCAGAAGACCTATGA 2523 0.4526 MYLNFHFLFSILLIFTTVVTAVNPGTTLSASNTNQSWSSPSSLFSLRFLPVDPPTSPPTFLAAIVYSGGAPIVWTAGNSLPVDSGGSLQFLTSGSLRLVNGSGTTVWDSGTANLNAKSATVDDSGRLVISNGTNDIWSSFDHLTDTLLPSQNFSVGKVLKSGSYSFNLSNVGNLSLFWNDSVNFWNQSLNSTVNQNLTSPVLSLTSIGILQLSDVNLSIPVVIAYSSDYADAGSGGSDVLRVLKLDSDGNLRIYSTSRGSSNPIVRWAAVQDQCQVYAYCGNYGICSYNNTNPVCGCPSKNFEMVSGVRQGCRRKVSLGDCRGNETMLSLDHTQLLTYPPDTESQTFFMGISACRGNCLSGSGACFASTSMSDGTGLCYIKSVDFVSGYNSPTLPSTSYVKVCPPLDPNPPPSLGETAREKSSRVPAWVVVAVVLGTLLGVVAIEGCFWFWCCRKTARFGVLSAQYALLEYASGAPVQFTYKELQRSTKGFKEKLGAGGFGAVYRGVLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNSSLDNFLFPKEEQSGKQLNWEYRFNIALGTARGITYLHEECRDCIVHCDIKPENILLDDNYVAKVSDFGLAKLVNPKDHRHRTLTSVRGTRGYLAPEWIANLRVTSKSDVYSYGMVLLEIVSGRRNFDVSDETNRKKFSIWAYEEFEKGNIKGILDKRLADIEIDMEQVTRAIKVCFWCIQEQPSQRPVMSKVVQMLEGVKEIDKPPPPKLVVEGPVSGTSTYISSNVSAFTTIGASPNVPSSSSSIQTSGVSNFALGRNPEKATSSLLQSEDL 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04558 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 564 773 - -
Vifa1g04558 840 PIRSF SRK 1 815 IPR024171 GO:0004674
Vifa1g04558 840 ProSiteProfiles Bulb-type lectin domain profile. 144 266 IPR001480 -
Vifa1g04558 840 Pfam D-mannose binding lectin 72 157 IPR001480 -
Vifa1g04558 840 SMART blect_4 28 143 IPR001480 -
Vifa1g04558 840 CDD STKc_IRAK 495 765 - -
Vifa1g04558 840 FunFam S-receptor-like serine/threonine-protein kinase 462 563 - -
Vifa1g04558 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 142 - -
Vifa1g04558 840 Gene3D - 143 269 IPR036426 -
Vifa1g04558 840 MobiDBLite consensus disorder prediction 803 840 - -
Vifa1g04558 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Vifa1g04558 840 SUPERFAMILY Protein kinase-like (PK-like) 472 764 IPR011009 -
Vifa1g04558 840 ProSiteProfiles Bulb-type lectin domain profile. 19 142 IPR001480 -
Vifa1g04558 840 Gene3D - 18 141 IPR036426 -
Vifa1g04558 840 ProSiteProfiles Protein kinase domain profile. 489 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04558 840 Pfam S-locus glycoprotein domain 239 298 IPR000858 GO:0048544
Vifa1g04558 840 Pfam Protein kinase domain 492 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04558 840 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 143 269 - -
Vifa1g04558 840 Gene3D Phosphorylase Kinase; domain 1 460 563 - -
Vifa1g04558 840 PANTHER OS07G0415500 PROTEIN 8 775 - -
Vifa1g04558 840 ProSitePatterns Protein kinases ATP-binding region signature. 495 517 IPR017441 GO:0005524
Vifa1g04558 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 188 IPR036426 -
Vifa1g04558 840 SMART serkin_6 489 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04558 840 Gene3D Transferase(Phosphotransferase) domain 1 564 772 - -
Vifa1g04558 840 Pfam PAN-like domain 321 387 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04558 Vifa-Chr1 712133196 712135718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04558 462 773 Receptor kinase-like Gene Family AT5G20050 43.692 9.40e-81 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa1g04558 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04558 - - cam:101506838 1413.28