LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g04557	ATGATCAAAACTATGGTTTATTTTCTAATTCAACTTCTTTCACTTCTTCTCCTTATTCTATCATCTTCATTCATAACAAGTGTTTCCACTTTTGAAGTTTCAATAAAAAACACTTACATAGAACCTTTTAAATGTTCTACTAAGATCAAAACATGCAATGCATCACTCTACCATATAAACTACAATCACAACATAGAACAACTAGCCGATTTTTACTCTGTCGATCCTTCCCAAATCAAACCGATAATTCGTACCACAAAACAAGATTACCTTATAAAAGTGCCTTGTTCTTGCCAAGACACCATTGACCTTAACGGTTATTTCTATGGCACAAACTACAAAGTGAGTCCTAATGAGAGTTTTATGAATATTAACAATCTTTTTTACAGTGGTCAAACTTTTCATGTAAATGAAGATTTGGTTGCAAATGAGAATGTAACAATACACATTCCTTGTGGATGTTCAGAACTTGAGTCACAAATTGTTGTTACATATACTGTTCAACAAGGTGATACACCAACATCAATTTCTCTCTTGTTAAATGCTAGTATTGATGGCATGGTGAAAATGAATGAAATTTTGGGTCCTAATCCAACATTCATTGATATTGGTTGGGTATTATATGTTCCTAAGGAATTAAAAGGTTCACCACTTTCCAATGAAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCTTAGTGAGTGTGACATTGCTTTCAGTTATTACCTTGATGGTTTTCATCCTCAGAAGAAATAAAGGCTATGGAAGTAGCAAAAATGATCCAAAAACTTTCTCTAAAAGATCACTTGCCAATAGAACCATTTCTCTAAGGAATCAAGAATTTCATAAAGAATATATGGAAGATGCAACACAATTTGATTCAGAAAGGCCAGTGATTTATGATTTTGAGGAGATTGAAGATGCTACAAACAACTTTGATGAAACTAGAAGGATTGGAGTTGGTGGATATGGTACTGTCTATTTTGGAATGCTAGAAGATAAAGAAGTTGCTGTGAAGAAAATGAAGTCTAACAAATCGAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATTAACATTGTGGAATTGTTGGGATATGCAAGTGGAGATGATCACCTTTATTTGGTGTATGAGTACGTTCCTAATGGATCTCTAAGTGAACACCTTCATGATCCACTATTAAAAGGTCACCAACCTCTTTCTTGGTGTGCTAGAGCTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACACGATTACACCAAAGCGCGATATGTGCACCGTGATATAAAGACTTGTAATATTCTTCTTGATGCGAAACTCAGAGCAAAGGTAGCCGATTTTGGACTTGCAAAGCTCGTGGAACGAACCAATGATGAAGAATTTTTAGCAACAAGACTTGTGGGAACACCAGGCTACCTTCCACCTGAATCGGTGAAGGAGCTTCAAGTGACGATAAAAACCGATGTATTTGCATTTGGCGTGGTTCTGAGTGAGTTGATAACGGGGAAACGTGCATTGTTTCGTGACAACCAAGAAGCTAATAATATGAAATCACTTATTGCAGTTATAAACAAAATATTTCAAGATGATGAGCCTGTGAATGTTTTAGAAGAAGCTGTAGATGGAAATCTTCTACGTAGTTATCCTATTGAAGATGTTTACAAGATGGGAGAATTATCACATTGGTGTTTGAGTGAAAATCCAGTGGACAGACCTGAAATGAAAGAGATTGTTGTGGTGTTGGCAAAGATTGTAATGTCTTCAATAGAATGGGAAGCGTCACTAGGTGGGGACAGTCAAGTTTTTAGCGGTGTATTTGATGGAAGATGA	1860	0.3565	MIKTMVYFLIQLLSLLLLILSSSFITSVSTFEVSIKNTYIEPFKCSTKIKTCNASLYHINYNHNIEQLADFYSVDPSQIKPIIRTTKQDYLIKVPCSCQDTIDLNGYFYGTNYKVSPNESFMNINNLFYSGQTFHVNEDLVANENVTIHIPCGCSELESQIVVTYTVQQGDTPTSISLLLNASIDGMVKMNEILGPNPTFIDIGWVLYVPKELKGSPLSNEKEKKHKWVIIIGILVSVTLLSVITLMVFILRRNKGYGSSKNDPKTFSKRSLANRTISLRNQEFHKEYMEDATQFDSERPVIYDFEEIEDATNNFDETRRIGVGGYGTVYFGMLEDKEVAVKKMKSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARAQIALDSAKGIEYIHDYTKARYVHRDIKTCNILLDAKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQEANNMKSLIAVINKIFQDDEPVNVLEEAVDGNLLRSYPIEDVYKMGELSHWCLSENPVDRPEMKEIVVVLAKIVMSSIEWEASLGGDSQVFSGVFDGR	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g04557	619	ProSitePatterns	Protein kinases ATP-binding region signature.	321	343	IPR017441	GO:0005524
	Vifa1g04557	619	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	434	446	IPR008271	GO:0004672\|GO:0006468
	Vifa1g04557	619	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	26	615	IPR044812	GO:0019199\|GO:0045087
	Vifa1g04557	619	SUPERFAMILY	Protein kinase-like (PK-like)	299	591	IPR011009	-
	Vifa1g04557	619	FunFam	Kinase family protein	291	386	-	-
	Vifa1g04557	619	CDD	LysM	163	209	IPR018392	-
	Vifa1g04557	619	Gene3D	Transferase(Phosphotransferase) domain 1	387	604	-	-
	Vifa1g04557	619	ProSiteProfiles	Protein kinase domain profile.	315	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g04557	619	SMART	LysM_2	164	210	IPR018392	-
	Vifa1g04557	619	Gene3D	Phosphorylase Kinase; domain 1	293	386	-	-
	Vifa1g04557	619	Pfam	LysM domain	165	210	IPR018392	-
	Vifa1g04557	619	Gene3D	LysM domain	158	217	IPR036779	-
	Vifa1g04557	619	ProSiteProfiles	LysM domain profile.	163	209	IPR018392	-
	Vifa1g04557	619	Pfam	Protein kinase domain	316	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g04557	619	SUPERFAMILY	LysM domain	163	210	IPR036779	-
	Vifa1g04557	619	SMART	serkin_6	315	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g04557	619	FunFam	PTI1-like tyrosine-protein kinase 3	387	605	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g04557	Vifa-Chr1	711514546	711517522	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g04557	295	619	Receptor kinase-like Gene Family	AT1G51940	50.453	1.20e-114	355

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Vifa1g04557		Pkinase	4.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g04557	-		-	gmx:100800907	910.983