Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04555 ATGAAAATGGCACGGATCATACTTGTGACACTTCTCTTGTTTAACTTGGTTATTGTTCCTTCTATAGCTTTTCCATTTGGACTTGACTGGGGATTTCATTTTGGAAATAATGATGATGCACAAGATGATAAACAACAAGTCCAACCACTACCAGTATTTGGTGAAGAAAAGGGAAATGCAAAGTTTGGCGATGGAAAGGGAAATGAAAAGTTGTTTGAAGATGAAAAGCTAATTGCAAATGCTGCGGCTGATGGTAGAGCTAAACTTAAGGTAGGATTCTATAGCCAAACCTGTCCCAATGCTGAGAAAATCGTTGCTGAAGCTCTTGCTGAAAGTGTTAAGATTAATCCAGAGGCAGTTGCTCAACTCCTTCGTCTTCAATTTCATGACTGTTTCGTTGTTGGATGTGATGCATCCGTCTTGCTAGACTACTCACCAACAGGAGACAAAGTAGAGAAAAGTTCTATGTTCAATGGTCAACTTCTCAAAGGAGCTGACACAGTTGATGACATAAAAGAAAAGCTAGAAGAACAATGTCCAGGAATAGTGTCATGCTCAGACACATTAGCATTCTCAATCAATGAAGGAATGTACCTTGCCGGTTTACCTCGTAGAGAACCTCTTGGCGGCCGCAGAGATTCGCTCGTTTCTCTCGCATCCCTCGTGGAAGACGACAATCTCCCACAGCCTAATTGGTCAATGGAAAAAATGGTTTCACTCTTTATAAAGAAAGGTTTCACAATTGAAGAAATGGTTATCTTACTCGGAGCACATTCAATTGGTTCGGCTCATTGTGATGTTTTTATGGAAAGGATTTTTAATTACGAAAACACGAGGAAGCCTGACCCTACGCTAACAGATCCAGTTGTAAAGGAGTTTCAAGGTATCTGTAAGAATGCTGGGACACAGCTATTTAGAAACCCAACTGTGAATTTCGATGAGACACCAACAAAGCTTGATAACTTGTTTTACAAGAATATGGTGACAAGAAACAAGACGGTCTTGGTTACGGACTCTAATTTGATTAATGATCCTAGAACAATTCCTATTGTTGCGAAGATGGCGGCTGAGAATGGTTTGTGGCAAAAGAGATTTGCTGATGCTATGGATAAGATGGGTGCTTTAAATGTTCTTACTGGAAATGATGGTGAAGTGAGGACAACTTGTAGGGCCACTAATAACTAA 1185 0.4017 MKMARIILVTLLLFNLVIVPSIAFPFGLDWGFHFGNNDDAQDDKQQVQPLPVFGEEKGNAKFGDGKGNEKLFEDEKLIANAAADGRAKLKVGFYSQTCPNAEKIVAEALAESVKINPEAVAQLLRLQFHDCFVVGCDASVLLDYSPTGDKVEKSSMFNGQLLKGADTVDDIKEKLEEQCPGIVSCSDTLAFSINEGMYLAGLPRREPLGGRRDSLVSLASLVEDDNLPQPNWSMEKMVSLFIKKGFTIEEMVILLGAHSIGSAHCDVFMERIFNYENTRKPDPTLTDPVVKEFQGICKNAGTQLFRNPTVNFDETPTKLDNLFYKNMVTRNKTVLVTDSNLINDPRTIPIVAKMAAENGLWQKRFADAMDKMGALNVLTGNDGEVRTTCRATNN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04555 394 ProSitePatterns Peroxidases active site signature. 120 131 IPR019794 GO:0004601
Vifa1g04555 394 Gene3D Peroxidase, domain 2 228 372 - -
Vifa1g04555 394 ProSitePatterns Peroxidases proximal heme-ligand signature. 250 260 IPR019793 -
Vifa1g04555 394 FunFam Peroxidase 228 372 - -
Vifa1g04555 394 PRINTS Plant peroxidase signature 122 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 249 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 327 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 201 216 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 163 176 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 367 380 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 98 117 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Plant peroxidase signature 182 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 FunFam Peroxidase 92 237 - -
Vifa1g04555 394 Pfam Peroxidase 106 356 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PANTHER - 86 393 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 SUPERFAMILY Heme-dependent peroxidases 89 393 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 Gene3D - 92 393 - -
Vifa1g04555 394 ProSiteProfiles Plant heme peroxidase family profile. 88 393 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Haem peroxidase superfamily signature 201 213 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Haem peroxidase superfamily signature 183 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Haem peroxidase superfamily signature 312 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 PRINTS Haem peroxidase superfamily signature 120 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vifa1g04555 394 CDD secretory_peroxidase 88 392 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04555 Vifa-Chr1 710973338 710974648 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04555 87 393 Peroxidase AT5G17820 40.065 1.80e-72 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04555 K00430 - gmx:100802856 422.935