Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04539 ATGACAACCCGATTCAAGAAGAACAGGAAGAAGCGGGGCCACGTCAGCGCCGGACACGGTCGTATCGGAAAGCACAGAAAGCATCCCGGAGGTCGTGGTAACGCCGGAGGTATGCATCACCACCGTATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGCAAAGTCGGTATGCGTTACTTCCACAAGCTTAGGAACAAATTCTACTCCCCGATCGTGAATATCGACAGGCTTTGGTCGCTGGTTCCGGAGGATGTGAAGGAGAAGGCTGCGAAGTCGAAGGGCACTGCGCCGGTTATTGATGTTACGCAGCATGGTTTTTTCAAGGTTCTTGGGAAGGGTGTTTTGCCGAGTAATCAGCCGATTGTTGTTAAGGCGAAGCTGATTTCGAAGATTGCGGAGAAGAAGATTAAGGAGGCTGGTGGTGCTGTTGTTCTTACTGCCTAG 447 0.5145 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYSPIVNIDRLWSLVPEDVKEKAAKSKGTAPVIDVTQHGFFKVLGKGVLPSNQPIVVKAKLISKIAEKKIKEAGGAVVLTA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04539 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
Vifa1g04539 148 FunFam 60S ribosomal protein L27a 58 148 - -
Vifa1g04539 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Vifa1g04539 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vifa1g04539 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 145 IPR021131 -
Vifa1g04539 148 Gene3D - 58 148 - -
Vifa1g04539 148 MobiDBLite consensus disorder prediction 1 35 - -
Vifa1g04539 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04539 Vifa-Chr1 708266932 708267378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04539 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 87.838 2.51e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04539 K02900 - gmx:100817971 273.478