Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04537 ATGGATAATCATTCCACCAATAACAACAATGACAGTTCCATAATTTCATCTGTTCAGTTAGAATCTGCTTCTAACCGACAACCACCCCCTTTTCGTAAGATGATAGCAGTTGCTTCCATTGCCGCCGGCATCCAGTTCGGTTGGGCCCTACAACTATCTTTATTGACACCTTACATCCAACTGCTTGGCGTCCCACATAAATGGGCCGCCAACATCTGGCTGTGTGGTCCTATTTCGGGCATGATCATCCAACCGATTGTCGGTTATTACAGTGACCGTTTACGTTCTCGTTTTGGTCGCCGCCGTCCATTCATATTCTTCGGTGCCATTGCAGTTGCGATTGCAGTCTTTCTCATCGGCTATGCAGCTGATCTCGGTCACTCCTTCGGAGATGATCTCAAGAAAAAGACGCGACCGAAAGCTGTTGTCATCTTTGTATTCGGATTCTGGATACTTGACGTTGCTAATAACATGCTCCAAGGACCTTGTCGTGCCTTCATCGGCGACCTTGCCGCTGAAGACCATAAAAGAATGAGAACAGGTAATGCACTGTTCTCGTTCTTCATGGCTGTCGGTAATGTTCTTGGTTATGCAGCAGGCTCTTACCGTAAACTCTTCATGATGTTCCCTTTCACTAAAACCGAAGCCTGTAACGAGTTTTGCGCAAATCTTAAAACTTGTTTCTTCATTGCAATATTTCTCCTTATCGTACTTTCAGCCTTTGCACTTCTTTACGTAGAAGACATTCCATTACCAATTGTAGAATCACAATCGCAGACACAAATACAGACACAATTAGAACCAGAACAACAGGTTTCGTGTTTCGGAGAAATACTAGGTGCATTCAATGGACTACAAAGACCAATGTGGATGCTAATGTTGGTAACAGCTATAAACTGGGTTGCATGGTTCCCATTTTTCTTGTTCGACACTGATTGGATGGGTCACGAAGTGTACGGTGGCGATCCGGGAGACAACACATACAATCGTGGAGTCCGTGCCGGAGCAATGGGGCTCATGATCAATGCTGTTGTGCTTGCTTTAATGTCGTTAGCGGTGGAGCCATTAGGGCGTTTTGTTGGGGGTGCAAAAAGACTTTGGGGGATTGTGAATATCATTCTTGCGGTTGGACTCGGCATGACTATAGTCATTACCAAGGCAGCTCAGCATGAACGCCGCGTCAGCGATGGTAATACGCCTTCTGCTGAAATTAAGGCTGCCTCGTTCGTTTTCTTCGCTGTTCTGGGAATCCCTCTTGCGATTAATTTCAGTGTTCCCTTTGCTTTAGCATCTATTTACTCCAGCGCAACAGGGGCTGGACAAGGTTTATCTTTGGGAGTTCTTAATATTGCAATTGTCGTTCCTCAAATGATAGTATCGGCATTGAGTGGACCATGGGACTCTTTGTTTGGCGGAGGCAACTTGCCGGCGTTTGTGGTCGGTGCCGTGGCAGCCGCCATCAGTGGTGTATTAGCAGTTATTGTTTTACCTACCCCAAAGGCAACCGATGTGGCCAAGGTTTCAGTTGCGGGTGGATTTCATTAG 1545 0.4621 MDNHSTNNNNDSSIISSVQLESASNRQPPPFRKMIAVASIAAGIQFGWALQLSLLTPYIQLLGVPHKWAANIWLCGPISGMIIQPIVGYYSDRLRSRFGRRRPFIFFGAIAVAIAVFLIGYAADLGHSFGDDLKKKTRPKAVVIFVFGFWILDVANNMLQGPCRAFIGDLAAEDHKRMRTGNALFSFFMAVGNVLGYAAGSYRKLFMMFPFTKTEACNEFCANLKTCFFIAIFLLIVLSAFALLYVEDIPLPIVESQSQTQIQTQLEPEQQVSCFGEILGAFNGLQRPMWMLMLVTAINWVAWFPFFLFDTDWMGHEVYGGDPGDNTYNRGVRAGAMGLMINAVVLALMSLAVEPLGRFVGGAKRLWGIVNIILAVGLGMTIVITKAAQHERRVSDGNTPSAEIKAASFVFFAVLGIPLAINFSVPFALASIYSSATGAGQGLSLGVLNIAIVVPQMIVSALSGPWDSLFGGGNLPAFVVGAVAAAISGVLAVIVLPTPKATDVAKVSVAGGFH 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04537 514 Pfam MFS/sugar transport protein 37 302 - -
Vifa1g04537 514 CDD MFS_SLC45_SUC 34 492 - -
Vifa1g04537 514 NCBIfam sucrose/proton symporter 30 501 IPR005989 GO:0005886|GO:0008515|GO:0015770
Vifa1g04537 514 Gene3D MFS general substrate transporter like domains 30 496 IPR036259 -
Vifa1g04537 514 PANTHER SUGAR TRANSPORTER 31 495 - -
Vifa1g04537 514 SUPERFAMILY MFS general substrate transporter 30 501 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04537 Vifa-Chr1 708170636 708174124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04537 16 514 Sucrose Transporter Gene Family AT1G22710 61.417 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04537 K15378 - gmx:100782007 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04537 1 708170636 708174124 Vifa3g02690 3 741504111 741506688 PCT