Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04534 ATGCCTCAACTACTCACAGGCACACACCCCTACTTACCTCCACCACCAATCCACCACCACCACCGCTTCAAACCTCTAATCACAGTCTCCTCCAACAACCGCTTCAATTTCGCAGCAAATCGAATCGCTCTATCCTACTCTAAGCGCATTCTCTTACCATCTCCGTTAAAGTCAGCATCCATCAACGAAGTCTCCGTCCAGAATAATCCAGAAGCTTCCAGTATTTCTGATGAAGTCCTCGGCAGAATACGAGAATTGGTTAAGTTCCTTCCTTCAATTTTTCCCGGAGGAGCCTGGTGGAACTTCTCCGATGAGGTGGATGCTTCGATTTTCGGTCAACCGGTTACGGTCTGGTACGCTTTGGGTAAAATGTGGAACCTTGTTGCTCGTGATAGATGGGTCATTTTCGCTGCTTTCGCTGCTCTCATCATTGCAGCAGTTTCGGAGATTTCAATACCACATTTTTTGACAGCTTCAATATTCTCAGCTCAGGGCGGGGATACTACGGTTTTTCATAGGAATGTGCGGTTATTGATTCTCTTGTGTGGTATTTCTGGAATATGCAGTGGGATTCGAGGTTGCTTTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTCCTTCTTCAGGATATATCATTTTTTGACAATGAAACAGTAGGAGATTTGACAAGTAGACTTGGGGCAGATTGTCAGCAAGTTTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTCCTTCAGGGAGGAGGTTCATTAATCTACTTATTGATTTTGTCTTGGCCACTTGGTTTATGTACGTTGGTGATATGCTCCATATTAGCAGCGGTCATGTTACGTTATGGAAGGTACCAGAAGAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCTAATAATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTTCGTGTTTATGGAACAGAAGAAGAAGAACAGGGAAGGTACAAATTGTGGCTGGAAAAATTAGCAGACATAAGCTTGCGACAAAGCGCTGCATATGGATTTTGGAATTTTAACTTCAACACTCTTTATCACTCAACTCAGGTTATTGCCGTGCTGTTTGGAGGAATGTCTATTCTAGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGTTAATTTATTCAACCTGGTGGGTGGGTGACAATATATCCAATTTGATGCAGTCAGTTGGAGCTAGTGAGAAAGTGTTCAACTTAATGGATCTCTCGCCTAGCAGCCAATTTATAACAGAAGGAATGAGGTTGCAAAGTTTAACGGGGCATTTGGAGTTTGTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTAAACTTTGTTGTCAATCCTAGCGAGGTGGTTGCCATTGTTGGTCTTAGCGGCAGCGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAGTGGTCAGATTTTGGTAGATGGTGTCCCTCATAAAGACTTGGATGTCATGTGGTGGAGAGAGAGAATCGGATATGTGGGACAGGAACCAAAGCTATTCCGGATGGATATTAGCTCGAACATCAGATATGGATGTACCCGAGATGTAAAGCAGGAGGATATTGAGTGGGCTGCGAAGCAGGCCTATGCTCACGACTTTATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTTTTAAGTGGCGGACAAAAGCAGCGAATTGCTATCGCTAGGGCCATTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCATTGGATGCTGAAAGTGAACATAACGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCATCAAGGAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCTGCTGACAGGATTGTGGTTATGGATAGGGGTCAAATTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTGAAAGACGGTTTATATGCTCGGTTGACTAGAAAACAAGCTGATTCGATGGAGTGA 2091 0.4295 MPQLLTGTHPYLPPPPIHHHHRFKPLITVSSNNRFNFAANRIALSYSKRILLPSPLKSASINEVSVQNNPEASSISDEVLGRIRELVKFLPSIFPGGAWWNFSDEVDASIFGQPVTVWYALGKMWNLVARDRWVIFAAFAALIIAAVSEISIPHFLTASIFSAQGGDTTVFHRNVRLLILLCGISGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGRYQKKAARLIQEVTASANNVAQETFSLIRTVRVYGTEEEEQGRYKLWLEKLADISLRQSAAYGFWNFNFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFNLMDLSPSSQFITEGMRLQSLTGHLEFVNVSFHYPSRPTVSVVQHVNFVVNPSEVVAIVGLSGSGKSTLVNLLLRLYEPTSGQILVDGVPHKDLDVMWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDRGQIVENGSHRELLLKDGLYARLTRKQADSME 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04534 696 Gene3D ABC transporter type 1, transmembrane domain 119 436 IPR036640 GO:0005524|GO:0016020
Vifa1g04534 696 ProSitePatterns ABC transporters family signature. 589 603 IPR017871 GO:0005524|GO:0016887
Vifa1g04534 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 691 IPR027417 -
Vifa1g04534 696 SUPERFAMILY ABC transporter transmembrane region 123 433 IPR036640 GO:0005524|GO:0016020
Vifa1g04534 696 Gene3D - 441 696 IPR027417 -
Vifa1g04534 696 FunFam Multidrug ABC transporter ATP-binding protein 443 695 - -
Vifa1g04534 696 SMART AAA_5 478 673 IPR003593 GO:0016887
Vifa1g04534 696 CDD ABC_6TM_TAP 147 425 - -
Vifa1g04534 696 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 136 417 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04534 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 451 690 IPR003439 GO:0005524
Vifa1g04534 696 PANTHER ABC TRANSPORTER B FAMILY 130 688 IPR039421 -
Vifa1g04534 696 Pfam ABC transporter transmembrane region 136 402 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04534 696 Pfam ABC transporter 470 617 IPR003439 GO:0005524
Vifa1g04534 696 FunFam ABC transporter B family member 26, chloroplastic 117 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04534 Vifa-Chr1 707818345 707824159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04534 206 696 Calmodulin-binding Proteins AT2G36910 34.600 9.58e-72 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04534 - - gmx:100813359 1084.32