Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04528 ATGCTATCACCGCCACCAGAATTGCCTAGTCATGTTAATAACATGATCAAAGTGTTGAATGGTAGTGATATTAAATATATCATGTGTAAGGAATTGTTTAAATCAGATCTCAACTATTACCTCAATCGTCTTTCAATGCCGATTGCACAAATTAAGTCTGATTTTCTCACAGAAATAGAAAAGACAACTTTGGAAACAAGAGATCATGAAGGAAAACCGATTGGTATAAAAGTGATTGTGTTAGATCCTTGTTTGAACGAATTTTCGTTGTTTTTGAAGAAGTGGAACATGAAGACTACTAGTATTTATAATCTTCATCAAGATTGGACACATGTTTTGTTGGAGAATAATTTTAAAGAAAATCAAAAACTTGACATTTGGTCATTTAGAATTAATGAGAAGTTGTACCTTTTACTCAATGATAATGAGACACACAAAATTGAAGAAAGTAGAGAGCTGAAGAATTCAACCGGGGTTTCGAAAAAGAAAGAAGAATGA 498 0.3213 MLSPPPELPSHVNNMIKVLNGSDIKYIMCKELFKSDLNYYLNRLSMPIAQIKSDFLTEIEKTTLETRDHEGKPIGIKVIVLDPCLNEFSLFLKKWNMKTTSIYNLHQDWTHVLLENNFKENQKLDIWSFRINEKLYLLLNDNETHKIEESRELKNSTGVSKKKEE 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04528 165 SUPERFAMILY DNA-binding pseudobarrel domain 26 138 IPR015300 -
Vifa1g04528 165 Gene3D - 17 151 IPR015300 -
Vifa1g04528 165 Pfam B3 domain-containing protein At2g31720-like 8 113 IPR005508 GO:0003677
Vifa1g04528 165 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 3 141 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04528 Vifa-Chr1 707041291 707041788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04528 12 139 B3 DNA Binding Superfamily AT1G05930 25.385 1.30e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04528 - - psat:127101787 238.81