Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04527 ATGATAAAAAAAAAAAGACGCCGTCCAAATAATGAAGATATCATATATGATGGTGAAAGAAAAGTGAAATCAAAGTCTACAATTAGGAAGAAACCAATTATTCGCAAGAAAGAAACTATGCTATCACCGCCACCAGAATTGCCTAGTCATGTTAATAACATGATCAAAGTGTTGAATGGTAGTGATATTAAATATATCATGTGTAAGGAATTGTTTAAATCAGATCTCAACTATTACCTCAATCGTCTTTCAATGCCGATTGCACAAATTAAGTCTGATTTTCTCACAGAAATAGAAAAGACAACTTTGGAAACAAGAGATCATGAAGGAAAACCGATTGGTATAAAAGTGATTGTGTTAGATCGTTGTTTGAACGAATTTTCGTTGTTTTTGAAGAAGTGGAACATGAAGACTACTAGTATTTATAATCTTCATCAAGATTGGACACCTGTTTTGTTGGAGAATAATTTTAAAGAAAATCAAAAACTTGACATTTGGTCATTTAGAATTAATGAGAAGTTGTACCTTTTACTCAATGATAATGAGACACACAAAATTGAAGAAAGTAGAGAGCTGAAGAATTCAACCGGGGTTTCAAAAAAGAAAGAAGAATGA 615 0.3154 MIKKKRRRPNNEDIIYDGERKVKSKSTIRKKPIIRKKETMLSPPPELPSHVNNMIKVLNGSDIKYIMCKELFKSDLNYYLNRLSMPIAQIKSDFLTEIEKTTLETRDHEGKPIGIKVIVLDRCLNEFSLFLKKWNMKTTSIYNLHQDWTPVLLENNFKENQKLDIWSFRINEKLYLLLNDNETHKIEESRELKNSTGVSKKKEE 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04527 204 Pfam B3 domain-containing protein At2g31720-like 47 152 IPR005508 GO:0003677
Vifa1g04527 204 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 4 180 IPR005508 GO:0003677
Vifa1g04527 204 Gene3D - 56 190 IPR015300 -
Vifa1g04527 204 SUPERFAMILY DNA-binding pseudobarrel domain 65 177 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04527 Vifa-Chr1 707025961 707026575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04527 51 178 B3 DNA Binding Superfamily AT1G05930 25.385 2.25e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04527 - - psat:127101787 283.493