Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04524 ATGTTCGGACTCTCTCAACCCGCTCCAGATTCTCCGAAATCCACCATCAAATTCCTCTGTAGCTACGGCGGAAAAATCCTCCCTCGTTATCCCGACGGCAAACTCCGCTACCTCGGCGGTCACACACGCGTCGTCTCCGTCGATCGCTCTGTTCAATTTTCCGAACTGCTTCCAAAGCTAGAAGAACTCTGCGGTTCCTCAGTGACGCACCTCCGCTGCCAGTTACCCGCTGAAGACCTCGACGCTTTGGTTTCCATAACCTCCGATGAGGATCTCGTCAACCTCATCGAAGAATACGATCGTACCGCATCGCCGCAATTGCCGTTGAAGATCAGAGCGTTCATTTCCAACAAGGTTTCCAAACCTCCGTTACCAAATCTACCAAAAACAGCATCAGTCTCTTCTTCATCCTCAGCGTCGTCAACATCTTCTTCATCATCTTTTACCGGTGGAGGTTTTGTTCGGAACTATACGACGGCGCCACTGGTAGTTAGCCGATGCGTTCATCATATGTCGCAACTGAATGTAAACCATGTGAATATGGAAGGATCTTCGGGGAGGAATATTCCCCTGCAGCGCAACTGTAATCACTGGCAATAG 600 0.5017 MFGLSQPAPDSPKSTIKFLCSYGGKILPRYPDGKLRYLGGHTRVVSVDRSVQFSELLPKLEELCGSSVTHLRCQLPAEDLDALVSITSDEDLVNLIEEYDRTASPQLPLKIRAFISNKVSKPPLPNLPKTASVSSSSSASSTSSSSSFTGGGFVRNYTTAPLVVSRCVHHMSQLNVNHVNMEGSSGRNIPLQRNCNHWQ 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04524 199 MobiDBLite consensus disorder prediction 127 149 - -
Vifa1g04524 199 CDD PB1_UP2 19 115 - -
Vifa1g04524 199 MobiDBLite consensus disorder prediction 125 149 - -
Vifa1g04524 199 SUPERFAMILY CAD & PB1 domains 32 118 - -
Vifa1g04524 199 Gene3D - 34 113 - -
Vifa1g04524 199 Pfam PB1 domain 32 110 IPR000270 GO:0005515
Vifa1g04524 199 PANTHER OS05G0427100 PROTEIN-RELATED 10 138 - -
Vifa1g04524 199 SMART PB1_new 30 114 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04524 Vifa-Chr1 706880652 706881343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04524 16 115 MAP Kinase Kinase Kinase AT5G57610 50.000 3.78e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04524 - - psat:127119257 328.176