Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04518 ATGGAAGAAGCACTTAACCGTCTCAACGGAACAACCCCAACAACCATCACAGAACCCGACTCAAAAAAACCAACCGCCATCAAAAGATCACTACGCGAAACCCCCACCTCCAACAACGGCGGTGCCCTTAGGTACCGTGGAGTACGCCGCCGACCATGGGGCCGTTACGCAGCCGAAATAAGAGATCCTCAGTCAAAAGAACGCCGCTGGTTAGGTACCTTTGACACTGCTGAAGAAGCTGCTTGTGCTTACGACTGCGCCGCACGTGCCATGCGTGGCATCAAAGCTCGTACCAACTTCGTTTATCCAACTTCTCCTCCACCTTCTTCCACTTTTCCTTCCTTCAACTTCCCAAAACATTCTTATTCTCATTCTCAAACTCTTGATAAAACCTCTGCAAACAACCGCCACGTGTCGTCTTCTGGTTGGTCAACCGCCTCTGAAACAAACGGTGTTGAGTTCGGTAACCATAGAAACCCTTCAACTACTTCACTTGATATGCTTCTGTTTCGTGAGTTTATCAACTCTTCAAATTCCAACTCTTCTTTCGTTTCATCTTCACCTCAGAATCACTTTCACGACAACTTTTCATATTCTTACAACAGCAATAACAACATAGGTAATTCTAGTACCAGTTCAACCTCTAGTTCTGCTTCTGGTTGTGGTTCTACTTTTCTCCCAGGTTGCTGTTTGGTGAACTCCTGTGGCGGGGGTGTTAATAGCAACAACATGAACAACACTTTTGTCGGTTTAGATTCTATCAATGCTTCAAAAATTTCTGCTGATGAAGACAATGAGTTTTTTCCTAAAGAGTCTTCTGATTCTGGATTATTGGAAGAGATTGTCAACAGGTTCTTACCAAAACCTAAGCAAGAAATGAAGAACGAGGGTTTTGGTAAGACTTTCTGTGACCCTTTTGTTCCTGCTGCACCTGTCTATGATCACACGCTTGAGATCAAAAAGGGTCTTCAAAAGAACGATTTTTTAGGTGGTGGATTTGATCAAAATGATTTCAATATGCAACAGTTTGAGAATTTTAACAATGGGTTTAACAGCACTTTTCAGTCTGTGCCTTATGGAAATGAACAAGTCATGGTGAATCGTGCTGAGAATTCTGTGTTTCAGTATCAAGAGGTTCTTAATGCTTTTGCACTAAGGATGCAAAATGCTTAG 1173 0.4288 MEEALNRLNGTTPTTITEPDSKKPTAIKRSLRETPTSNNGGALRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGIKARTNFVYPTSPPPSSTFPSFNFPKHSYSHSQTLDKTSANNRHVSSSGWSTASETNGVEFGNHRNPSTTSLDMLLFREFINSSNSNSSFVSSSPQNHFHDNFSYSYNSNNNIGNSSTSSTSSSASGCGSTFLPGCCLVNSCGGGVNSNNMNNTFVGLDSINASKISADEDNEFFPKESSDSGLLEEIVNRFLPKPKQEMKNEGFGKTFCDPFVPAAPVYDHTLEIKKGLQKNDFLGGGFDQNDFNMQQFENFNNGFNSTFQSVPYGNEQVMVNRAENSVFQYQEVLNAFALRMQNA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04518 390 MobiDBLite consensus disorder prediction 7 21 - -
Vifa1g04518 390 FunFam Ethylene-responsive transcription factor 2 44 102 - -
Vifa1g04518 390 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vifa1g04518 390 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Vifa1g04518 390 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Vifa1g04518 390 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Vifa1g04518 390 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vifa1g04518 390 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Vifa1g04518 390 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vifa1g04518 390 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 215 - -
Vifa1g04518 390 MobiDBLite consensus disorder prediction 1 46 - -
Vifa1g04518 390 CDD AP2 44 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04518 Vifa-Chr1 705906732 705907904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04518 1 289 AP2-EREBP Transcription Factor Family AT1G24590 37.097 1.09e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g04518 AP2 3.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04518 - - psat:127121366 609.757