Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04517 | ATGGAAGACTTTTGGAACATGATTTGTGATGATTCTGCTTGCTCTTCACTTGGAGGAAAACCCTTTTGTTTCGATTTCGGGGTTCTGAAGGATCCTTCTTCATGCATCAGCCATTTGTTGATCATTTTCCTTGATATGTTGTTGCTAATAGTTTTCACATTTGTCATAATCCAAAAGTGTTTCTTGAGGCCAATTCAGGCTCAGAATATAGTGGAAAAGTATTCAAAATTGCAGCTAGTTTCTGCAATAACCAGTGGCTGTCTCGGTTTGTTGCATTTGTGCTTTGGCATTTGGATTTTAGATGAGAAGATAAGGAAAAATCTCACTGTTTTTCCTCTATGTTTGTGGCTGCTAGAACTTCTTTGGGGATTCACATGGATCAAAGAATTGTCTCTTAAGGTCCATGATGATGATCTCATTAACCGTATAAGCGTAACCCCATTTGGAAGTGCGGGATTCTTTAGTAGAATGTCATTTTGGTGGTTGAATCCGCTGATGAAAGCGGGTCAAGATAAAATACTTCAGGACGAGGACATCCCAAAGTTACGCGAAGCAGATAGAGCAGAAGTATGCTATTCGTTATTTATAGATCAATTGAATAGACAAAAGCAGAAGGATCTGTCATCACCGTCATCCGTTTTATGGATAATAATTTTGTGCCACCGGAGAGAGATTTTAATATCAGGGTTCTTTGCATTTCTTAAGGTACTCACTCTATCTTCTTGTCCTGTAATTTTGAATGCCTTTATATTGGTGGCTGAGGGTAATAAAAGATTCAAATATGAAGGTTACTTGTTGGCCATATCGCTTTTATTTACAAAGATTTTAGAATCCTTATCTCAAAGACAGTGGTATTTTCGTTCTAGACTTATTGGTATGAAAGTTAGGTCATTAATCACTGCAGGCATTTATAAGAAACAACTGAGATTATCCGACGCTACTAGACTGGTTCACTCTAGTGGCGAGATAATGAATTATGTGAATGTGGATGCCTATAGAATTGGAGAATTTCCGTTTTGGTTTCACCAAACATGGACAACAGTTCTCCAACTATGCATCGCATTAGTAATTCTTTTCCGTGCTATTGGTCTAGCAACAATTGCATCATTGGTGGTGATAGTTTTGAGCGTGCTTTTAAATACTCCACTAGCAAAGTTACAACATAAGTTTCTAAGCAAACTTCTGCTGGCTCAAGATGAAAGGTTGAAGGCTTGTTCAGAGGCTCTAATGAATGTTAAAGTGTTGAAGTTATATGCATGGGAAAACCATTTTAAAAACGTGATTGAAAGTCTAAGAATTGTTGAACTAAAATGGTTGTCTTCGGTGCTTTTACAAAAGGCATATAGTGTGATTCTCTTTTGGTTTTCACCTATTTTGGTCTCTACTGCCACCTTTGTGGCTTGTTACTTGATCAACATTCCTTTACATGCAAATAATGTTTTCACATTCATCGCAACTTTGTGCCTTGTGCAAGATCCTATTTCAACCATCGGAGATGTTGTTGGCGCGATCATTCAAGCAAAGGTTTCCTTTTCTCGGGTTTTGATATTTCTCGAGGCACCTGAACTAAATACTACAGTTTTCAGAAAGAGGTGCTATGATGAGAAGTTGAAGGGCTCAATTCTAATCAAGTCTGCTGACTTTTCATGGGAAGATAATTTATTGAAGGCAACAATAACAAATATAAACTTGAATGTCAATGTTGGGCAAAAGATAGCTATTTGCGGAGAAGTTGGTTCAGGAAAATCAACTTTATTAGCAGCAATTCTCGGAGAAGTACCGAATACTAAAGGGAAAATCAAAGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAAAAGGAACAATACAAGAAAATATTTTGTTTGGATCGCCTTTGAATGCTAAAAGGTATCAAGAATCGCTTCGTCGGTCTTCACTCATGAAGGACCTTGAGTTGTTTCCATATGGTGATCTAACAGAGATAGGAGAGAGAGGTGTTAATCTAAGTGGAGGCCAGAAGCAGCGAATTCAACTTGCTCGGGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCTTTTAGTGCTGTTGATGCGCACACTGCAAAAATATTGTTCCATGAATACATATTGGAAGGACTTGCCAGAAAGACAGTACTTCTTGTGACTCATCAAGTTGATTATCTCCCTGCATTTGATTCTATCTTGTTGATGTTAGATGGAAAAATCCAACAAGCTGGTACTTATAATGATTTACTAACCTTTAGCCAAGAATTTAAGGACTTTGTTAATGCACACAAAAAGACGGGTGGTTCTTGGCAGCTTGCAGATGTTACTTCATCCCGAATACATTCAAAGAAGAAGAGAGAGAAAAGGGAGACACGGGATGAAGTCTTACTTACAATATCTCAATCAGAAAAGAGGCTATATATACTTCTTTCTGCTTTGGGTTTTCAATCATCGGAAAATTTGTTTAGACAGCTGATATCTTCTCTTTTTAGTGCGTCGATGTCTTTCTACGACACCACACCTTTGGGGAGGATACTTAGTAGGGTCTCATCGGATTTGAGCATTGTAGATCTTGATATCGCTTTTAACTTCACATATTATGTCGCATCCATTATGAATCATTATGCAAATATACTAGTTTTATCATCTGTCGCTTGGCAAGTCTTGCTTTTGTGTATACCAATGGCTTATGTTACTATTCGTTTACAGAGACACTACAATGCATGTGCAAAAGAACTTATGCGGATGAATGGAACAACAAAATCTTCTGTAGCTAATCATGTAGCTGAAACTTATGTTGGAGCTATGACAGTAAGGGCTTTCGAGGAGGAGGCTCGATTTGTCAACAAGAATCTTGATTTAATTGATGTTAATGCCAGTGCTTCCTTTCACAGTTTTGCCTCAAATGAGTGGTTGATTCAACGATTAGAAGTAATCTACGCAATTGTTCTTGCCTCTGCAGCACTATGCATAGCAATGCTTCCTTCAGGGACGTTTACATCGGGTTTTATTGGTATGGTCCTTTCTTATGGCCTTTTATTAAACACTTCTATAGTATACTCCACTCAATACCAATGCATTCTAGCAAATTATATAGTATCAGTAGAGAGGATAAATCAATACACTCACATACAGAGTGATAATCAAGAAGTGATGGAAGGAAATCATCCTCCACTTAATTGGCCAAATGCAGGAAAAGTAGAAATAAAAGACTTGAAGATACAATACAAACCTAATGGACCATTTGTACTTCATGGTATCACATGCACATTTGAAGGAGGGAACAAGATTGGTATTGTTGGTAGAACAGGTAGCGGAAAATCAACTCTCGTAGCTGCTTTGTTTCGTCTTGTGGAGCCAACAAGACGAAAAGTTTTAGTTGATGGAATAGATATATCATCTATTGGCCTTCATGACTTGAGGTCAAGTTTTGGAATTATACCTCAGGATCCCACCTTATTCATTGGAACAATTAGATATAACTTGGATCCTTTATCTCAACATTCTGATCAACAAATATGGGAGGTTCTTCGAAAGTGCCAGCTGCAAGAAGTTGTCGAAGATAAAGGCGGCTTAGATTCCTCAGTTGTTGAAAATGGAACAAACTGGAGCATTGGACAAAGGCAATTATTCTCTTTAGGGCGTGCGCTTTTGAGGAAAAGTAGGATATTGGTGTTAGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAAAATACTATTAAATCAGAATTTGATGGTTGTACAGTCATAACAGTAGCACACAAGATACCAACTGTGATGGATTGCAATATGATTCTTTCCATAAGTGATGGAAAATTGGTGGAGTATGATGAACCATTGAAGTTGATGAAGAGAGAAAAATCATTGTTTGGAAACCTTGTAAGGGAATATTGGTCTCATTTTCAGTTTGCAGAATCACATTAA | 3945 | 0.3752 | MEDFWNMICDDSACSSLGGKPFCFDFGVLKDPSSCISHLLIIFLDMLLLIVFTFVIIQKCFLRPIQAQNIVEKYSKLQLVSAITSGCLGLLHLCFGIWILDEKIRKNLTVFPLCLWLLELLWGFTWIKELSLKVHDDDLINRISVTPFGSAGFFSRMSFWWLNPLMKAGQDKILQDEDIPKLREADRAEVCYSLFIDQLNRQKQKDLSSPSSVLWIIILCHRREILISGFFAFLKVLTLSSCPVILNAFILVAEGNKRFKYEGYLLAISLLFTKILESLSQRQWYFRSRLIGMKVRSLITAGIYKKQLRLSDATRLVHSSGEIMNYVNVDAYRIGEFPFWFHQTWTTVLQLCIALVILFRAIGLATIASLVVIVLSVLLNTPLAKLQHKFLSKLLLAQDERLKACSEALMNVKVLKLYAWENHFKNVIESLRIVELKWLSSVLLQKAYSVILFWFSPILVSTATFVACYLINIPLHANNVFTFIATLCLVQDPISTIGDVVGAIIQAKVSFSRVLIFLEAPELNTTVFRKRCYDEKLKGSILIKSADFSWEDNLLKATITNINLNVNVGQKIAICGEVGSGKSTLLAAILGEVPNTKGKIKVYGKFAYVSQTAWIQKGTIQENILFGSPLNAKRYQESLRRSSLMKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTAKILFHEYILEGLARKTVLLVTHQVDYLPAFDSILLMLDGKIQQAGTYNDLLTFSQEFKDFVNAHKKTGGSWQLADVTSSRIHSKKKREKRETRDEVLLTISQSEKRLYILLSALGFQSSENLFRQLISSLFSASMSFYDTTPLGRILSRVSSDLSIVDLDIAFNFTYYVASIMNHYANILVLSSVAWQVLLLCIPMAYVTIRLQRHYNACAKELMRMNGTTKSSVANHVAETYVGAMTVRAFEEEARFVNKNLDLIDVNASASFHSFASNEWLIQRLEVIYAIVLASAALCIAMLPSGTFTSGFIGMVLSYGLLLNTSIVYSTQYQCILANYIVSVERINQYTHIQSDNQEVMEGNHPPLNWPNAGKVEIKDLKIQYKPNGPFVLHGITCTFEGGNKIGIVGRTGSGKSTLVAALFRLVEPTRRKVLVDGIDISSIGLHDLRSSFGIIPQDPTLFIGTIRYNLDPLSQHSDQQIWEVLRKCQLQEVVEDKGGLDSSVVENGTNWSIGQRQLFSLGRALLRKSRILVLDEATASIDNATDLILQNTIKSEFDGCTVITVAHKIPTVMDCNMILSISDGKLVEYDEPLKLMKREKSLFGNLVREYWSHFQFAESH | 1314 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04517 | 1314 | Gene3D | - | 522 | 785 | IPR027417 | - | |
Vifa1g04517 | 1314 | SUPERFAMILY | ABC transporter transmembrane region | 214 | 519 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g04517 | 1314 | SUPERFAMILY | ABC transporter transmembrane region | 810 | 1044 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g04517 | 1314 | Pfam | ABC transporter | 1086 | 1233 | IPR003439 | GO:0005524 | |
Vifa1g04517 | 1314 | Gene3D | - | 1053 | 1302 | IPR027417 | - | |
Vifa1g04517 | 1314 | CDD | ABC_6TM_ABCC_D1 | 227 | 514 | IPR044746 | GO:0140359 | |
Vifa1g04517 | 1314 | CDD | ABCC_MRP_domain1 | 541 | 741 | - | - | |
Vifa1g04517 | 1314 | ProSitePatterns | ABC transporters family signature. | 666 | 680 | IPR017871 | GO:0005524|GO:0016887 | |
Vifa1g04517 | 1314 | CDD | ABCC_MRP_domain2 | 1067 | 1286 | - | - | |
Vifa1g04517 | 1314 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 150 | 791 | - | - | |
Vifa1g04517 | 1314 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1058 | 1298 | IPR027417 | - | |
Vifa1g04517 | 1314 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 543 | 764 | IPR003439 | GO:0005524 | |
Vifa1g04517 | 1314 | CDD | ABC_6TM_ABCC_D2 | 809 | 1044 | IPR044726 | GO:0140359 | |
Vifa1g04517 | 1314 | FunFam | ABC transporter C family member 10 | 209 | 522 | - | - | |
Vifa1g04517 | 1314 | Pfam | ABC transporter transmembrane region | 813 | 1018 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g04517 | 1314 | Pfam | ABC transporter transmembrane region | 226 | 486 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g04517 | 1314 | Pfam | ABC transporter | 560 | 693 | IPR003439 | GO:0005524 | |
Vifa1g04517 | 1314 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 810 | 1032 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g04517 | 1314 | Gene3D | ABC transporter type 1, transmembrane domain | 806 | 1052 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g04517 | 1314 | FunFam | ABC transporter C family member 5 | 530 | 771 | - | - | |
Vifa1g04517 | 1314 | SMART | AAA_5 | 1095 | 1286 | IPR003593 | GO:0016887 | |
Vifa1g04517 | 1314 | SMART | AAA_5 | 568 | 747 | IPR003593 | GO:0016887 | |
Vifa1g04517 | 1314 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1069 | 1302 | IPR003439 | GO:0005524 | |
Vifa1g04517 | 1314 | FunFam | ABC transporter C family member 3 | 1052 | 1303 | - | - | |
Vifa1g04517 | 1314 | Gene3D | ABC transporter type 1, transmembrane domain | 197 | 521 | IPR036640 | GO:0005524|GO:0016020 | |
Vifa1g04517 | 1314 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 226 | 506 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vifa1g04517 | 1314 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 535 | 763 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04517 | Vifa-Chr1 | 704801962 | 704808051 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g04517 | 535 | 753 | Calmodulin-binding Proteins | AT2G36910 | 30.043 | 3.42e-24 | 108 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04517 | K05666 | - | jre:109014180 | 1578.92 |