Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04517 ATGGAAGACTTTTGGAACATGATTTGTGATGATTCTGCTTGCTCTTCACTTGGAGGAAAACCCTTTTGTTTCGATTTCGGGGTTCTGAAGGATCCTTCTTCATGCATCAGCCATTTGTTGATCATTTTCCTTGATATGTTGTTGCTAATAGTTTTCACATTTGTCATAATCCAAAAGTGTTTCTTGAGGCCAATTCAGGCTCAGAATATAGTGGAAAAGTATTCAAAATTGCAGCTAGTTTCTGCAATAACCAGTGGCTGTCTCGGTTTGTTGCATTTGTGCTTTGGCATTTGGATTTTAGATGAGAAGATAAGGAAAAATCTCACTGTTTTTCCTCTATGTTTGTGGCTGCTAGAACTTCTTTGGGGATTCACATGGATCAAAGAATTGTCTCTTAAGGTCCATGATGATGATCTCATTAACCGTATAAGCGTAACCCCATTTGGAAGTGCGGGATTCTTTAGTAGAATGTCATTTTGGTGGTTGAATCCGCTGATGAAAGCGGGTCAAGATAAAATACTTCAGGACGAGGACATCCCAAAGTTACGCGAAGCAGATAGAGCAGAAGTATGCTATTCGTTATTTATAGATCAATTGAATAGACAAAAGCAGAAGGATCTGTCATCACCGTCATCCGTTTTATGGATAATAATTTTGTGCCACCGGAGAGAGATTTTAATATCAGGGTTCTTTGCATTTCTTAAGGTACTCACTCTATCTTCTTGTCCTGTAATTTTGAATGCCTTTATATTGGTGGCTGAGGGTAATAAAAGATTCAAATATGAAGGTTACTTGTTGGCCATATCGCTTTTATTTACAAAGATTTTAGAATCCTTATCTCAAAGACAGTGGTATTTTCGTTCTAGACTTATTGGTATGAAAGTTAGGTCATTAATCACTGCAGGCATTTATAAGAAACAACTGAGATTATCCGACGCTACTAGACTGGTTCACTCTAGTGGCGAGATAATGAATTATGTGAATGTGGATGCCTATAGAATTGGAGAATTTCCGTTTTGGTTTCACCAAACATGGACAACAGTTCTCCAACTATGCATCGCATTAGTAATTCTTTTCCGTGCTATTGGTCTAGCAACAATTGCATCATTGGTGGTGATAGTTTTGAGCGTGCTTTTAAATACTCCACTAGCAAAGTTACAACATAAGTTTCTAAGCAAACTTCTGCTGGCTCAAGATGAAAGGTTGAAGGCTTGTTCAGAGGCTCTAATGAATGTTAAAGTGTTGAAGTTATATGCATGGGAAAACCATTTTAAAAACGTGATTGAAAGTCTAAGAATTGTTGAACTAAAATGGTTGTCTTCGGTGCTTTTACAAAAGGCATATAGTGTGATTCTCTTTTGGTTTTCACCTATTTTGGTCTCTACTGCCACCTTTGTGGCTTGTTACTTGATCAACATTCCTTTACATGCAAATAATGTTTTCACATTCATCGCAACTTTGTGCCTTGTGCAAGATCCTATTTCAACCATCGGAGATGTTGTTGGCGCGATCATTCAAGCAAAGGTTTCCTTTTCTCGGGTTTTGATATTTCTCGAGGCACCTGAACTAAATACTACAGTTTTCAGAAAGAGGTGCTATGATGAGAAGTTGAAGGGCTCAATTCTAATCAAGTCTGCTGACTTTTCATGGGAAGATAATTTATTGAAGGCAACAATAACAAATATAAACTTGAATGTCAATGTTGGGCAAAAGATAGCTATTTGCGGAGAAGTTGGTTCAGGAAAATCAACTTTATTAGCAGCAATTCTCGGAGAAGTACCGAATACTAAAGGGAAAATCAAAGTTTATGGGAAGTTTGCATATGTTTCTCAAACAGCATGGATACAAAAAGGAACAATACAAGAAAATATTTTGTTTGGATCGCCTTTGAATGCTAAAAGGTATCAAGAATCGCTTCGTCGGTCTTCACTCATGAAGGACCTTGAGTTGTTTCCATATGGTGATCTAACAGAGATAGGAGAGAGAGGTGTTAATCTAAGTGGAGGCCAGAAGCAGCGAATTCAACTTGCTCGGGCTCTTTATCAGAATGCTGATGTATATCTCTTGGATGATCCTTTTAGTGCTGTTGATGCGCACACTGCAAAAATATTGTTCCATGAATACATATTGGAAGGACTTGCCAGAAAGACAGTACTTCTTGTGACTCATCAAGTTGATTATCTCCCTGCATTTGATTCTATCTTGTTGATGTTAGATGGAAAAATCCAACAAGCTGGTACTTATAATGATTTACTAACCTTTAGCCAAGAATTTAAGGACTTTGTTAATGCACACAAAAAGACGGGTGGTTCTTGGCAGCTTGCAGATGTTACTTCATCCCGAATACATTCAAAGAAGAAGAGAGAGAAAAGGGAGACACGGGATGAAGTCTTACTTACAATATCTCAATCAGAAAAGAGGCTATATATACTTCTTTCTGCTTTGGGTTTTCAATCATCGGAAAATTTGTTTAGACAGCTGATATCTTCTCTTTTTAGTGCGTCGATGTCTTTCTACGACACCACACCTTTGGGGAGGATACTTAGTAGGGTCTCATCGGATTTGAGCATTGTAGATCTTGATATCGCTTTTAACTTCACATATTATGTCGCATCCATTATGAATCATTATGCAAATATACTAGTTTTATCATCTGTCGCTTGGCAAGTCTTGCTTTTGTGTATACCAATGGCTTATGTTACTATTCGTTTACAGAGACACTACAATGCATGTGCAAAAGAACTTATGCGGATGAATGGAACAACAAAATCTTCTGTAGCTAATCATGTAGCTGAAACTTATGTTGGAGCTATGACAGTAAGGGCTTTCGAGGAGGAGGCTCGATTTGTCAACAAGAATCTTGATTTAATTGATGTTAATGCCAGTGCTTCCTTTCACAGTTTTGCCTCAAATGAGTGGTTGATTCAACGATTAGAAGTAATCTACGCAATTGTTCTTGCCTCTGCAGCACTATGCATAGCAATGCTTCCTTCAGGGACGTTTACATCGGGTTTTATTGGTATGGTCCTTTCTTATGGCCTTTTATTAAACACTTCTATAGTATACTCCACTCAATACCAATGCATTCTAGCAAATTATATAGTATCAGTAGAGAGGATAAATCAATACACTCACATACAGAGTGATAATCAAGAAGTGATGGAAGGAAATCATCCTCCACTTAATTGGCCAAATGCAGGAAAAGTAGAAATAAAAGACTTGAAGATACAATACAAACCTAATGGACCATTTGTACTTCATGGTATCACATGCACATTTGAAGGAGGGAACAAGATTGGTATTGTTGGTAGAACAGGTAGCGGAAAATCAACTCTCGTAGCTGCTTTGTTTCGTCTTGTGGAGCCAACAAGACGAAAAGTTTTAGTTGATGGAATAGATATATCATCTATTGGCCTTCATGACTTGAGGTCAAGTTTTGGAATTATACCTCAGGATCCCACCTTATTCATTGGAACAATTAGATATAACTTGGATCCTTTATCTCAACATTCTGATCAACAAATATGGGAGGTTCTTCGAAAGTGCCAGCTGCAAGAAGTTGTCGAAGATAAAGGCGGCTTAGATTCCTCAGTTGTTGAAAATGGAACAAACTGGAGCATTGGACAAAGGCAATTATTCTCTTTAGGGCGTGCGCTTTTGAGGAAAAGTAGGATATTGGTGTTAGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTTCAAAATACTATTAAATCAGAATTTGATGGTTGTACAGTCATAACAGTAGCACACAAGATACCAACTGTGATGGATTGCAATATGATTCTTTCCATAAGTGATGGAAAATTGGTGGAGTATGATGAACCATTGAAGTTGATGAAGAGAGAAAAATCATTGTTTGGAAACCTTGTAAGGGAATATTGGTCTCATTTTCAGTTTGCAGAATCACATTAA 3945 0.3752 MEDFWNMICDDSACSSLGGKPFCFDFGVLKDPSSCISHLLIIFLDMLLLIVFTFVIIQKCFLRPIQAQNIVEKYSKLQLVSAITSGCLGLLHLCFGIWILDEKIRKNLTVFPLCLWLLELLWGFTWIKELSLKVHDDDLINRISVTPFGSAGFFSRMSFWWLNPLMKAGQDKILQDEDIPKLREADRAEVCYSLFIDQLNRQKQKDLSSPSSVLWIIILCHRREILISGFFAFLKVLTLSSCPVILNAFILVAEGNKRFKYEGYLLAISLLFTKILESLSQRQWYFRSRLIGMKVRSLITAGIYKKQLRLSDATRLVHSSGEIMNYVNVDAYRIGEFPFWFHQTWTTVLQLCIALVILFRAIGLATIASLVVIVLSVLLNTPLAKLQHKFLSKLLLAQDERLKACSEALMNVKVLKLYAWENHFKNVIESLRIVELKWLSSVLLQKAYSVILFWFSPILVSTATFVACYLINIPLHANNVFTFIATLCLVQDPISTIGDVVGAIIQAKVSFSRVLIFLEAPELNTTVFRKRCYDEKLKGSILIKSADFSWEDNLLKATITNINLNVNVGQKIAICGEVGSGKSTLLAAILGEVPNTKGKIKVYGKFAYVSQTAWIQKGTIQENILFGSPLNAKRYQESLRRSSLMKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADVYLLDDPFSAVDAHTAKILFHEYILEGLARKTVLLVTHQVDYLPAFDSILLMLDGKIQQAGTYNDLLTFSQEFKDFVNAHKKTGGSWQLADVTSSRIHSKKKREKRETRDEVLLTISQSEKRLYILLSALGFQSSENLFRQLISSLFSASMSFYDTTPLGRILSRVSSDLSIVDLDIAFNFTYYVASIMNHYANILVLSSVAWQVLLLCIPMAYVTIRLQRHYNACAKELMRMNGTTKSSVANHVAETYVGAMTVRAFEEEARFVNKNLDLIDVNASASFHSFASNEWLIQRLEVIYAIVLASAALCIAMLPSGTFTSGFIGMVLSYGLLLNTSIVYSTQYQCILANYIVSVERINQYTHIQSDNQEVMEGNHPPLNWPNAGKVEIKDLKIQYKPNGPFVLHGITCTFEGGNKIGIVGRTGSGKSTLVAALFRLVEPTRRKVLVDGIDISSIGLHDLRSSFGIIPQDPTLFIGTIRYNLDPLSQHSDQQIWEVLRKCQLQEVVEDKGGLDSSVVENGTNWSIGQRQLFSLGRALLRKSRILVLDEATASIDNATDLILQNTIKSEFDGCTVITVAHKIPTVMDCNMILSISDGKLVEYDEPLKLMKREKSLFGNLVREYWSHFQFAESH 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04517 1314 Gene3D - 522 785 IPR027417 -
Vifa1g04517 1314 SUPERFAMILY ABC transporter transmembrane region 214 519 IPR036640 GO:0005524|GO:0016020
Vifa1g04517 1314 SUPERFAMILY ABC transporter transmembrane region 810 1044 IPR036640 GO:0005524|GO:0016020
Vifa1g04517 1314 Pfam ABC transporter 1086 1233 IPR003439 GO:0005524
Vifa1g04517 1314 Gene3D - 1053 1302 IPR027417 -
Vifa1g04517 1314 CDD ABC_6TM_ABCC_D1 227 514 IPR044746 GO:0140359
Vifa1g04517 1314 CDD ABCC_MRP_domain1 541 741 - -
Vifa1g04517 1314 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524|GO:0016887
Vifa1g04517 1314 CDD ABCC_MRP_domain2 1067 1286 - -
Vifa1g04517 1314 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 150 791 - -
Vifa1g04517 1314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1058 1298 IPR027417 -
Vifa1g04517 1314 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 543 764 IPR003439 GO:0005524
Vifa1g04517 1314 CDD ABC_6TM_ABCC_D2 809 1044 IPR044726 GO:0140359
Vifa1g04517 1314 FunFam ABC transporter C family member 10 209 522 - -
Vifa1g04517 1314 Pfam ABC transporter transmembrane region 813 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04517 1314 Pfam ABC transporter transmembrane region 226 486 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04517 1314 Pfam ABC transporter 560 693 IPR003439 GO:0005524
Vifa1g04517 1314 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 810 1032 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04517 1314 Gene3D ABC transporter type 1, transmembrane domain 806 1052 IPR036640 GO:0005524|GO:0016020
Vifa1g04517 1314 FunFam ABC transporter C family member 5 530 771 - -
Vifa1g04517 1314 SMART AAA_5 1095 1286 IPR003593 GO:0016887
Vifa1g04517 1314 SMART AAA_5 568 747 IPR003593 GO:0016887
Vifa1g04517 1314 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1069 1302 IPR003439 GO:0005524
Vifa1g04517 1314 FunFam ABC transporter C family member 3 1052 1303 - -
Vifa1g04517 1314 Gene3D ABC transporter type 1, transmembrane domain 197 521 IPR036640 GO:0005524|GO:0016020
Vifa1g04517 1314 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 226 506 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g04517 1314 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 763 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04517 Vifa-Chr1 704801962 704808051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04517 535 753 Calmodulin-binding Proteins AT2G36910 30.043 3.42e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04517 K05666 - jre:109014180 1578.92