Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04508 ATGGATCCTAGAAATGAATACCAGCCTGGATCACAGTCAGCAATGCAGGACCATATGAATGAAGTTTATCCGAGTAGAAGACCGTATGACCTCAATGCATCAGAAGTTAAGCCTGTACATCATTTCTCGATACAGACAGGCGAGGAATTCGCTCTTGAATTTATGAGAGATAGGTCGAATCCTGGGAAGCCTGTGTTTTCGAATGTCGGTGATCCGAATTATACCACAGGTTATATGGAACTGAAAGGAATTTTAGGCATCAGTCACGCAGGATCTGAAACTGGATCAGACATTTCCATGCTATCAATGATGGAGAAATATCCTAAAGAGTTTGATAGAACGAATGCGTCGTTTCTTGGAGACAGAAGCAACTATGGATCAATTCGATCGATACCTAGATCTTCAATGAATCAGGACAACAGGCAGTTTGTCCAAGGATATGGCTCTTCTGAGAGTTACTATAACTCATCAATGATGATGAAGTTTCTTTGCAGTTTCGGCGGTAGAATATTACCGCGACCATCTGATGGAAAGCTAAGGTATGTAGGAGGCCAAACAAGTATTCTCCGTTTAAGAAAGGACATATCTTATCACGAGGTCATTCAGAAAGCATTGCTAATATATAACCAGGTTCATACAATTAAGTATCAGCTTCCCGGGGAAGATCTCGATGCCTTGGTATCTGTGTCATCCGACGAAGATTTACAGAATATGATGGAAGAATGTAATCATCTAGAAGATAGAGAAGGATCGCAAAAGCTTAGGATGATTTTGTTCTCTATCAGTGACTTGGAGGATGCTCAGTTTGGTCTCACCTCCATGGGTGATGATTCTGAATTCCAGTATGTTATTGCTGTTAATGGCATGGACTTGGAATCGAGAAAAAACTCAACTATGGCAGGTTTCAGCTATTCTGCAAACGATATAAATGAGTTGGGCAGGCAAAGTGTTGATGGACAGGGCAATACTCCCCCGACCAACAATTTTGACTCATCATTGCCTACTCATTTTTCTCAGCCAGGGCTACCAACTTCCTCTAATTCGTACGAAATGTATCCACTGTTTTACGCTGATCAAATGATGCACCACGGTGAACCGAATGGTCATGGTCATGGTCATGGTCAATATCTTATGCATCACGGCGTTGTTAATCCTTCTTATAAACCTTTTATTGAAGAAACTCGTATTAATATGATTCCTTATATGCCGAATATTCAACAAGGGGTTTTAAACGGAAGTCACCAACCTAGTGGATTACAAGTACAAAATTCAGAAATACCAGAATCTTTGACAAGAATGATGGGTGATAATTCAGTTCAACAAGAAACACTATCGTCGACTCCTTCGCAACTGTTTGACGGTTACTCACAAAATGATTTTTCGGAAGCATCAGCTGTAGTTACTGCGCCAGAGGGACATTCATTGCCTCCAAGAACGAACCAGCCGCAAGATTACGACGAAGCTTCTTCTACTTCCGGCAGTGCATTTGGTGCTCCTTATGTTGATTCCCAGTCCAATGTAGTTGACTTAAGTTGTCTTCACCCTCCTCCTCTTCCTAAAAGAAGTTATTGTTCAGAAAGAGCTCCAAGGAAGCAAGTAGAGTCGCTGAATCGGTCCTCAAAGTCAGATGATGCGCACAATCCTCAGTTTCATGTTACGGATTTACTTTCTGTGGTCACCTCACAGGATTCAGCTATAGACCCTGGAAACAACTTGCATGATGGAAATCTGTCTAATCTAGCCGAGGAATTGAACATCACATCGAAGCCATTGCATGCAGATGGCAAAGGAACTGAAGATATCTTAAATAAGGACAATGCTGTTACATTGGAAACAGAAAATAGTTTTAATGATAACCATAAAAAGTCTCTGCTTGAAAGTAAATCAGACATCCCTACTCGGTATCATGATCCAGCATCCAATCTTCCAGATGTTGATTGGAGTGACACCTCTGTGAAAGAATCAAATGACGATTTTAACAATCAAGCACTACCTGTTCCTTTGAACGCAAACGCAACTGCAAAAGTTGATTCGCAAGCACAAGGTGACATTCTCATTGATATTAATGATAGGTTCCCCCGCGAGTTGCTTAATGATATCTTCTCCAAAGCAATACTAGAAGAAGATTCCTCTAGTCAGCATCCATTAGCTTCAGATGGAATGGGTTTAAGCATAAACATGGAGAATCACGAACCTAAAAGTTGGTCATATTTTCAAAAATTGGCGCACGACGGGATTGATAACGAAAACGCATCTCTTATTGACCAGGATCATCTTGGTTTTTCACCTGCTATAGTTGGAGATAACAGAGCTCAACACGTTACACCTTTAACAACTGATGAAGTTCCTCTAAACCGTGCAGAATTCCATCTCAATTTTGGCAATGAAATTCAGAAAGACTTGCATGGAGAAAACAGAACCGAAACTACTGGTCTGAAAACAAATTATGATCCGTTGCAAATTAATGACACTGAAAGTATGCAATTCGATGCTATGTTGGACAACCTAAGAGCACAAGAGTCACACTATGAGGTTGAGAAGTTTGAAAAGAAAAATAGCAGTCTACCTCCTCTTGATCCTTCTTTAGAAGAATTTGATATGAATACATTGCAGGTCATAATGAATGAAGATCTTGAAGAGCTGAAGGAACTAGGTTCTGGTACCTTCGGAACTGTATATCATGGAAAATGGCGAGGAACAGATGTTGCCATTAAGAGAATAAAGAAAACCTGCTTCACCGGCCGGTCGTCTGAGCAAGAGAGACTGACTGTTGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCGAATGTGGTGGCATTTTATGGTGTGGTGCAGGATGGACCGGGAGGAACAATGGCAACTGTTACGGAGTATATGGTTGATGGTTCTCTTAGGCATGTATTGCTTCGCAAGGATAGGCAACTCGATCGTCGCAAGAGACTGATAATTGCAATGGATGCAGCTTTTGGAATGGAGTATTTGCATTCGAAAAATATTGTGCATTTTGACTTAAAATGCGACAATTTACTTGTAAACTTAAAAGATCCGTTACGGCCAATATGCAAGGTTGGGGATTTTGGTTTGTCTAAAATTAAACGAAATACCTTAGTTTCCGGTGGGGTGCGGGGAACTCTACCGTGGATGGCACCGGAGCTGCTGAACGGTAGCAGTAGCAAGGTCTCAGAAAAGGTTGATGTGTTCTCCTTTGGCATAGTACTATGGGAGATTCTTACTGGTGAAGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGAATTGTTAACAACACACTAAGACCAACAATCCCGAATTATTGTGATCTTGAATGGAGAACCCTGATGGAGCAATGCTGGGCACCAAATCCTCCAGCCAGGCCTTCTTTTACAGAAATAGCGAGTCGGTTGCGTATTATGTCTTCGATGGCTAGCCAGGCGAAATCACCAGGCAACAAGGCATCCAAATGA 3483 0.4157 MDPRNEYQPGSQSAMQDHMNEVYPSRRPYDLNASEVKPVHHFSIQTGEEFALEFMRDRSNPGKPVFSNVGDPNYTTGYMELKGILGISHAGSETGSDISMLSMMEKYPKEFDRTNASFLGDRSNYGSIRSIPRSSMNQDNRQFVQGYGSSESYYNSSMMMKFLCSFGGRILPRPSDGKLRYVGGQTSILRLRKDISYHEVIQKALLIYNQVHTIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLEDREGSQKLRMILFSISDLEDAQFGLTSMGDDSEFQYVIAVNGMDLESRKNSTMAGFSYSANDINELGRQSVDGQGNTPPTNNFDSSLPTHFSQPGLPTSSNSYEMYPLFYADQMMHHGEPNGHGHGHGQYLMHHGVVNPSYKPFIEETRINMIPYMPNIQQGVLNGSHQPSGLQVQNSEIPESLTRMMGDNSVQQETLSSTPSQLFDGYSQNDFSEASAVVTAPEGHSLPPRTNQPQDYDEASSTSGSAFGAPYVDSQSNVVDLSCLHPPPLPKRSYCSERAPRKQVESLNRSSKSDDAHNPQFHVTDLLSVVTSQDSAIDPGNNLHDGNLSNLAEELNITSKPLHADGKGTEDILNKDNAVTLETENSFNDNHKKSLLESKSDIPTRYHDPASNLPDVDWSDTSVKESNDDFNNQALPVPLNANATAKVDSQAQGDILIDINDRFPRELLNDIFSKAILEEDSSSQHPLASDGMGLSINMENHEPKSWSYFQKLAHDGIDNENASLIDQDHLGFSPAIVGDNRAQHVTPLTTDEVPLNRAEFHLNFGNEIQKDLHGENRTETTGLKTNYDPLQINDTESMQFDAMLDNLRAQESHYEVEKFEKKNSSLPPLDPSLEEFDMNTLQVIMNEDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKTCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRQLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSSKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNYCDLEWRTLMEQCWAPNPPARPSFTEIASRLRIMSSMASQAKSPGNKASK 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04508 1160 ProSiteProfiles Protein kinase domain profile. 878 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04508 1160 Gene3D Phosphorylase Kinase; domain 1 871 965 - -
Vifa1g04508 1160 SMART serkin_6 878 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 518 549 - -
Vifa1g04508 1160 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 966 1158 - -
Vifa1g04508 1160 SUPERFAMILY Protein kinase-like (PK-like) 864 1141 IPR011009 -
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 629 664 - -
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 474 500 - -
Vifa1g04508 1160 PRINTS Tyrosine kinase catalytic domain signature 1068 1090 IPR001245 GO:0004672|GO:0006468
Vifa1g04508 1160 PRINTS Tyrosine kinase catalytic domain signature 960 973 IPR001245 GO:0004672|GO:0006468
Vifa1g04508 1160 PRINTS Tyrosine kinase catalytic domain signature 997 1015 IPR001245 GO:0004672|GO:0006468
Vifa1g04508 1160 PRINTS Tyrosine kinase catalytic domain signature 1112 1134 IPR001245 GO:0004672|GO:0006468
Vifa1g04508 1160 Gene3D - 178 261 - -
Vifa1g04508 1160 ProSitePatterns Protein kinases ATP-binding region signature. 884 909 IPR017441 GO:0005524
Vifa1g04508 1160 SMART PB1_new 174 261 IPR000270 GO:0005515
Vifa1g04508 1160 Gene3D Transferase(Phosphotransferase) domain 1 966 1159 - -
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 524 548 - -
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 644 664 - -
Vifa1g04508 1160 CDD STKc_MAP3K-like 884 1141 - -
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 436 464 - -
Vifa1g04508 1160 CDD PB1_UP2 163 259 - -
Vifa1g04508 1160 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1003 1015 IPR008271 GO:0004672|GO:0006468
Vifa1g04508 1160 Pfam Protein tyrosine and serine/threonine kinase 879 1141 IPR001245 GO:0004672|GO:0006468
Vifa1g04508 1160 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 179 261 - -
Vifa1g04508 1160 SUPERFAMILY CAD & PB1 domains 175 263 - -
Vifa1g04508 1160 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 871 965 - -
Vifa1g04508 1160 PANTHER SERINE-THREONINE PROTEIN KINASE 204 1142 - -
Vifa1g04508 1160 Pfam PB1 domain 176 259 IPR000270 GO:0005515
Vifa1g04508 1160 MobiDBLite consensus disorder prediction 436 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04508 Vifa-Chr1 703054143 703058686 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04508 32 1160 MAP Kinase Kinase Kinase AT1G16270 47.801 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vifa1g04508 PK_Tyr_Ser-Thr 1.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04508 - - gmx:100801946 1617.05