Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04499 ATGTCAAGTGAAGTAGCAAAGAAAGAAGGGTCTCTAAATCTGAAAATCACTAGCAAAAGCTATGTGAAACCAGATGAAAAAATAGGGAAAAAAGAGTATCAATTGGTCACATTTGACCTACCTTACTTGGCTTTTTACTATAACCAAAAACTGATTTTTTACAAAGGAGGTAACTTTGAAGAGAATGTTGAGAAGCTGAAAAATGGGCTTGGTGTTGTTTTGAAGGAGTTTCATCAACTTGCTGGTAAAATAGGAAAAGATGAAGAGGGTGTTTTCTTGGTTGAATATGATGATGATATGGTTGGTGTCGAAGTTGTTGAAACCGTTGCTAATGAGGTTAGTGTTCAAGATCTAACCGTTGCTGAAAGTAATGCTAGCTTGAAGGAATTGATTCCTTATGGTGGAATCTGTAATTTGGAAGGCATGCATAGACCTTTGTTGGCTGTTCAGTTGACAAAGCTCAAAGATGGGCTCGCCATGGGCTTGGCTTTTAACCATGCGGTCCTTGATGGAACTTCCACATGGCACTTCATGACTTCATGGGCCGAGATATGCAGCGTTACACCCTCCACAACAGCCCAACCATTCTTGGACCGGACCAAGGCCCGAAACACTCGCGTGAAGCTTGATCTCTCTCTACCTGAGCCCAAAGCCCTACCACCATTGACTAATGGTGAGGCAAAGTCAGAGAACGAAAGCCCTGCACCATTAGTTAATGGTGGGGTAAAGTCTGAGCCTATATTAAGAGAAAAGATTTTTAAATTTTCTGAAGTGGCTATTGATAAGATTAAGTCAACAGTCAATCAAACTCTTCGAAGCGATGGTTCAAAACCATTCTCAACATTCCAAGCTCTCTCCACTCATATTTGGCGCCATGTGACTCTTGCACGTGACCTAAAACCCGAAGACTACACGGTTTTCACCGTCTTCGTGGATTGTAGAAAACGAGTGGATCCACCAATGCCGGAGGCCTATTTCGGGAACCTAATTCAAGCCATATTCACGGTCACGGCCGCGGGACTTTTATCGGCCCACCCGCCACAATTCGGTGCATCCTTGATCCAAAAGGCAATCGAAGCGCATGACGCTAAAGCTATCGATGGACGTAACAAAGAGTGGGAGAGTTCACCCAAGATATTTGAATTCAAAGATGCTGGAATCAATTGTGTGGCTGTAGGAAGTTCACCAAGGTTTAAGGTTTATGACATTGATTTCGGATGGGGGAGGCCAGAGAATGTGAGAAGTGGAACTAATAACAAGTTTAATGGAATGATATATTTGTATCCAGGGAAGAGTGGAGGAAGAAGCATTGATGTAGAACTAACATTGGAGCCTGAGGCTATGGGAAAGTTGGAGCAAGATAAGGAATTTCTTATGGAGAATATAATATAA 1392 0.4253 MSSEVAKKEGSLNLKITSKSYVKPDEKIGKKEYQLVTFDLPYLAFYYNQKLIFYKGGNFEENVEKLKNGLGVVLKEFHQLAGKIGKDEEGVFLVEYDDDMVGVEVVETVANEVSVQDLTVAESNASLKELIPYGGICNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTSTWHFMTSWAEICSVTPSTTAQPFLDRTKARNTRVKLDLSLPEPKALPPLTNGEAKSENESPAPLVNGGVKSEPILREKIFKFSEVAIDKIKSTVNQTLRSDGSKPFSTFQALSTHIWRHVTLARDLKPEDYTVFTVFVDCRKRVDPPMPEAYFGNLIQAIFTVTAAGLLSAHPPQFGASLIQKAIEAHDAKAIDGRNKEWESSPKIFEFKDAGINCVAVGSSPRFKVYDIDFGWGRPENVRSGTNNKFNGMIYLYPGKSGGRSIDVELTLEPEAMGKLEQDKEFLMENII 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04499 463 Gene3D - 228 454 IPR023213 -
Vifa1g04499 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 458 - -
Vifa1g04499 463 Coils Coil 448 463 - -
Vifa1g04499 463 MobiDBLite consensus disorder prediction 214 238 - -
Vifa1g04499 463 Gene3D - 11 212 IPR023213 -
Vifa1g04499 463 Pfam Transferase family 14 457 - -
Vifa1g04499 463 FunFam Tryptamine hydroxycinnamoyl transferase 236 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04499 Vifa-Chr1 701031503 701033615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04499 46 460 Monolignol Biosynthesis Gene Families AT5G48930 26.573 3.43e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04499 K19747 - gmx:100790669 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04499 1 701031503 701033615 Vifa1g04499 1 701031503 701033615 ECH