Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04471 ATGTCATCCTCTTCAGGTTTCAATCCCCGTGGTGGTGGATCGTCGGAGTATTACGCCGGCACACCAATAAACACCCTGAACAACCTTATGTCAACAACCCCTTCCCTCTCCATCAACAACCTGAATCATCCTTCTCTTTACCGAACCCAACACCATCTCCAACAACAACACCACCACCCACAACAACAACAACTTCCTCCAATTTTTCTAGATCCTTCCTTACAGATCCCTCAACATCGCATCATCGGAAAACGCACCTTAGCTGAATTCCAAACCCAACAAAACCAAACCTACAATCACAACCTTAACCTCAACAACAACCACCTTAACAACAACCATCACAATCATGCTCTTTCAAATCTTTTACTTCGTGCAGTAAAACCAAGAACCAGTTTCCAGTTTCATAACAATAACCCTTTGTCTTTCTCTGTCCCGGAATTACAAAACCCTTCATCTTTCAATAACAACTTTCAAACGCCGCGTTTAGGTGTTCCTTTACTTCACCAGCTTCGCCCTCAACCACAACCACAACCACAACCAATTAACCCACAATCAATCAACCCGAATTTCCACTACCGAAACTCCAATTTAGGCCAAGTGGTTAACCGGGTTCAACCCGTTGAGCCGGAGAAAAAGATCAACGACGATCAGAAGATTCTGCAAGAATTAGAAAAACAGCTTCTTGCAGATGATGATGAATGTGAAGAAGGCGATGCTTCGGTTATTACAACAAGTGAATGGACAGAGACTTACCAGAACCTACTAAGTGGGCCTGGTGGGCCCGATGGGCTCCTGTGTGGGCCTATTCCAGTCCCAGTCCCAGCCCAGAAACCTTCTTCATCATCTCCAACCACATCCACAACTTCATCAACTTCCACTGCAGCAACTTCGCATGCATCGGTTTGTTCAAGACAAACCCTAATTGAAGCGGCTTCTGCAATTTCAGATGGTAAAAACGACGTCGCTTTGGAGATCTTAACACAACGCTTGGGTTTGAATTCGAATCCCAATGGAAATTCGGATCAACGCTTAACCAATTGCATGGTCTCGGCTCTGAAATCGAGGATGAATCCGTTTGAAACACATTTCCATGTTGCGGAGCTCTTCGGTAGAGAACATGCAGAGTCGACTCAGCTGTTTCTGGAAAACTCGGTTTGTTTCAAGGTGAGTTACATGGCTGCGAATCTTGCGATTTTGGAATCTGCATTTGAGGAAAACGGAAGAGGCTTCTGTGTGGTGGATTTCGAAATTGGACAGGGGAAACAGTACGTCAATCTCCTGCACGCGCTTAAAGCGCGTGATATTGCGCTACCGCCAGGTTTTACTGTTAAGTTAATCGCTGTGGCGGAGAACGGCGGTGATGAGATGGTTATAGCTGTCGGAGAGATGCTGGTTCGTCAGGCGGAGAGGCTCAGAATCGGTTTTGAGTTTCGTCTTGTTTCTGTTTCTCAGAGACAGGTAACTGAGCTGAGTCGCGAGTTGTTAGGTTGTGACTCGGACGAAACGCTTGTGGTGAATTTCGCGTTTAAGCTGAATCGGATTCCAGACGAAAGCGTTTCAACTGAGAATCCACGCGACGAGCTTTTACGGCGCGTGAAGAGACTCTCCCCGCGCGTGGTAACTGTCGTGGAGCAAGAAATGAACTGTAATACTGCGCCGTTTTTGGCTCGAGTTGCTGAGTCATGGTCTTACTACTCTGCTTTGTATGACTCGGTCGAGACTGTGTTAGGGAAGGATAGCCTGGAACGAGTCAAGATCGAAGAAGGACTGAGTCGCAAGATAAGGAACTCGGTGGCGTGTGAAGGAAGAGACCGTATTGAACGGTTTGAGGTATTCGGGAAATGGCGGGCGCGTATGAGTATGGCGGGGTTTATGTTGAAACCGATGAGTCAAAACGTTGCTGAGTCAATAAAATCGCGTCTTGCTGGAGGTAATAACAGCCGAGTTAACACAGGACTCACTGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGTTGGATGGGAAGAACACTCACCGTTGCTTCTGCTTGGCGTTAA 2037 0.4683 MSSSSGFNPRGGGSSEYYAGTPINTLNNLMSTTPSLSINNLNHPSLYRTQHHLQQQHHHPQQQQLPPIFLDPSLQIPQHRIIGKRTLAEFQTQQNQTYNHNLNLNNNHLNNNHHNHALSNLLLRAVKPRTSFQFHNNNPLSFSVPELQNPSSFNNNFQTPRLGVPLLHQLRPQPQPQPQPINPQSINPNFHYRNSNLGQVVNRVQPVEPEKKINDDQKILQELEKQLLADDDECEEGDASVITTSEWTETYQNLLSGPGGPDGLLCGPIPVPVPAQKPSSSSPTTSTTSSTSTAATSHASVCSRQTLIEAASAISDGKNDVALEILTQRLGLNSNPNGNSDQRLTNCMVSALKSRMNPFETHFHVAELFGREHAESTQLFLENSVCFKVSYMAANLAILESAFEENGRGFCVVDFEIGQGKQYVNLLHALKARDIALPPGFTVKLIAVAENGGDEMVIAVGEMLVRQAERLRIGFEFRLVSVSQRQVTELSRELLGCDSDETLVVNFAFKLNRIPDESVSTENPRDELLRRVKRLSPRVVTVVEQEMNCNTAPFLARVAESWSYYSALYDSVETVLGKDSLERVKIEEGLSRKIRNSVACEGRDRIERFEVFGKWRARMSMAGFMLKPMSQNVAESIKSRLAGGNNSRVNTGLTVKEENGGICFGWMGRTLTVASAWR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04471 678 ProSiteProfiles GRAS family profile. 294 678 IPR005202 -
Vifa1g04471 678 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 277 666 IPR005202 -
Vifa1g04471 678 Pfam GRAS domain family 304 678 IPR005202 -
Vifa1g04471 678 MobiDBLite consensus disorder prediction 278 297 - -
Vifa1g04471 678 MobiDBLite consensus disorder prediction 267 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04471 Vifa-Chr1 694122947 694124983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04471 57 678 GRAS Transcription Factor Family AT5G52510 44.343 4.13e-137 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g04471 GRAS 3.6e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04471 - - gmx:100788551 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04471 1 694122947 694124983 Vifa1g04471 1 694122947 694124983 ECH
Vifa1g04471 1 694122947 694124983 Vifa3g02885 3 809849795 809851795 PCT