Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04463 ATGGATCCTAAAGGTTCAATTGATGATAGTAACTGTGACAATAGACTCTACATTGGCAATCTTGATCTCAGAATTACAGAAGCTGCTCTACTCAAAATGTTTTCTCCTTACGGAAAGATTGTGTCTGAGGACTTCTTGTGGCAGACTCGAGGTCCCAAACGTGGGGAGCCACGTGGTTTCGCTTTTCTTCAGTATAGCACAAAAGAGGAAGCAATATTGGCCAAGGAGAAGATGCATGGACGGTTAGCTTGTGGCCGGCCATTGGTTGTCCGCCTAGCAAGTGAGAGGCATGCTCTGGAAGTAGCTGATAGCTCTACGACGAAAGCAGTAGGTGAAGGGCACAAGTTGCATCTCACTGGTGGTGGCATGGGACAATCAAGTCGTGGTGCGAAAATTGCTGCAATAAAGAAGAAGTTGAAGTCTTTAGAGGAAGATAACTCTATGAACAAGAAACAAAAGCAGAGTGATAATATATCTTGA 480 0.4437 MDPKGSIDDSNCDNRLYIGNLDLRITEAALLKMFSPYGKIVSEDFLWQTRGPKRGEPRGFAFLQYSTKEEAILAKEKMHGRLACGRPLVVRLASERHALEVADSSTTKAVGEGHKLHLTGGGMGQSSRGAKIAAIKKKLKSLEEDNSMNKKQKQSDNIS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04463 159 SUPERFAMILY RNA-binding domain, RBD 6 97 IPR035979 GO:0003676
Vifa1g04463 159 Gene3D - 11 104 IPR012677 -
Vifa1g04463 159 SMART rrm1_1 15 91 IPR000504 GO:0003723
Vifa1g04463 159 CDD RRM_RBM18 15 94 IPR039157 -
Vifa1g04463 159 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 88 IPR000504 GO:0003723
Vifa1g04463 159 Coils Coil 132 152 - -
Vifa1g04463 159 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 95 IPR000504 GO:0003723
Vifa1g04463 159 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 14 146 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04463 16 96 Eukaryotic Initiation Factors Gene Family AT1G71770 38.272 1.09e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04463 K24527 - gmx:100804800 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04463 1 692740656 692742098 Vifa1g04463 1 692740656 692742098 ECH