Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04459 ATGGACACTCAAAATCTAACTATACATTTCATTCTTCTGATTTTCATTCCCTTTTCATTCTCTTCTTTCATTCCTGTAGACAACTATCTTCTCAACTGTGGATCAAATACCAATGTTACCCTTTTCAACAGGCTTTTCATAGGTGATGATTTCACCAACAAAGGTTCAATTTTGATCTCTGCAGACCAATCAATTTCCTCAACCAACCAAAACCCTCCTCCAAATTTGTCTACTTTGTATCAAACTGCAAGAGTTTTCACCAAAATGGGAAGTTACAGATTCCTCTTGAAGCAAAATGGTACCTTCTTTGTTCGTTTTCTTTTCTCATCTTTTAAGGCTCAAGGTTTTGATCTAAAAGATGCAAACTTTAGTGTCTTGGTTGGTGGAAAATTGATTTTGAATAGTTTCAATCCTAAGGCTGGTACTAATGATGAAGTTATTAAAGAGTTTGTTATGAAAGTGGAATCAAATTTGCTTGAAATTGTGTTTATACCTGTTAGTGATTCTGGTTTTGGCTTTGTTAATGGTATTGAAGTGTTTTCTGCTCCTGAAGATTTTGTTGTAGATTATGGAGCTAGATTTGTTGACCCTTTTGGTGTTAGGGAATACAAGAATCTTTCTTACGATGTTTTAGAAACGGTTCATAGGATTAATGTTGGAGGTGTGAAATTAACTCCATTTAATGATACCCTTTGGAGGACATGGATTCCTGATAGTGATTTTCTGGTTTTTAAGGAAGCAGCTAAGGCTGTAGTGAGCACTCACACACCAGATTATCAGAAAGGAGGCGCGACTCGAGAGATCGCACCCGATAGTGTTTATATGACTGCTCAGGAGATGAATAGGGATAATCAATCTATTTTAGCTTCACAGTTCAACATAACATGGAATTTTCAAGTGGCTTCTGTTGGTGTTCGACACTTGGTTCGGCTGCATTTTTGCGATATTGTTAGTCCTTCTCTTAATTTGCTATACTTTGATGTGTATATTAATAGTTATTCTGCGTATAAGGATGTTGATTTGTCGTCGCTTACTTTCCATATGCTCACATCTCCGGTTTATGTTGATTTCGTTGTTGATTCTGATGACTCGGGTGTCATTCAAATAAGTGTTGGTCCTTCTAGTCTTAGTAGTTCAATGAGGATAAATGCGATACTTAATGGCGCCGAGATTATGAAGGTTGTGAGTGTTATGGATTTGAGTTCACATGTTGCTTCTAGGAAGAAAAGGTTGTTGGAGGTGTTAGTTGGTTCAATTGTTGGTGGAATTATTGTTTTACTTTTAGTTATAGCTGTTTTTCTAGTTTGTCGCGGACGCAGGAAGAAGAAACCAAAACTAAGGACAGTTGAAAGTGTTGGATGGACGCCTTTACGCATGTTTGGAGGGAGTTCACTTAGCAGAATGTCAGAAGGGACAGCTTATCAGTCGCCCGGTTCGTATGGACATTTCGGCTTGAAAATTGCTTTTGCTGATATACAATTAGCAACTAACAATTTCGATGAAAGTCTAGTTATAGGATCGGGCGGATTTGGTATGGTTTACAAAGGTGTTCTAAGAGACAATTTGAAAGTTGCTGTCAAAAGAGGCATGCCCGGATCAAGACAAGGCCTACCTGAATTCCAAAGTGAAATAACAATTTTATCCAATATCCGCCATCGCCATCTTGTTTCTCTAGTTGGATTCTGCGAAGAGAATTCGGAAATGATACTTGTCTATGAGTATGTAGAAAGAGGGCCACTCAAAGATCATCTATATGGTTCAGAAGGACTAGTTCAACCTTTGTCGTGGAAGAAGCGTCTCGAGATATGCATTGGCGCGGCTCGAGGTCTACACTATCTTCACACAGGTTTCACACAAGGAATCATCCACCGCGACATTAAATCAACCAACATTTTACTCGACGAAAACTACATTGCTAAGGTTGCTGATTTTGGTCTTTCGAGATCAGGACCTTGTATCGATGAAACACACGTGAGTACTAATGTGAAAGGTAGTTTCGGTTATCTTGATCCAGAGTATTTTCGAAGGCAACAGCTTACGGATAAATCAGATGTTTATTCGTTCGGCGTTGTTCTCTTCGAGGTTCTTTGTGTTAGACCTGCTGTTGATCCACAACTTGACAGGGAACAAGTGAATTTAGCAGAATGGGCTCTTAAATGGCAGAAGAAAGGTATGTTGGAACACATTATTGATCCTTATCTTGTTGGTAAGATCAAAGAAAGCTCATTGAAGAAATTTTCTGAAACCGCGGAGAAATGTTTGGCCGAATACGGCGTTGATAGGCCGTCTATGGGTGATGTGTTATGGAATTTGGAACATTCACTTCAGCTTCAAGAAAGTGATCAAGAAGTGAATGTCACATATGCTAATAGCATTGGTGATTCAGAAGTGAATGTTACATCTTCTATAGTTCTTAGGAATCCTCCTAGCAACATAAGATTAGAGGGAGATTATGATAACAATTATTCTGATGTAAGTACTACTAAAGTTTTTTCTCAACTAATCACTAGGGAAGCTCGATGA 2523 0.3849 MDTQNLTIHFILLIFIPFSFSSFIPVDNYLLNCGSNTNVTLFNRLFIGDDFTNKGSILISADQSISSTNQNPPPNLSTLYQTARVFTKMGSYRFLLKQNGTFFVRFLFSSFKAQGFDLKDANFSVLVGGKLILNSFNPKAGTNDEVIKEFVMKVESNLLEIVFIPVSDSGFGFVNGIEVFSAPEDFVVDYGARFVDPFGVREYKNLSYDVLETVHRINVGGVKLTPFNDTLWRTWIPDSDFLVFKEAAKAVVSTHTPDYQKGGATREIAPDSVYMTAQEMNRDNQSILASQFNITWNFQVASVGVRHLVRLHFCDIVSPSLNLLYFDVYINSYSAYKDVDLSSLTFHMLTSPVYVDFVVDSDDSGVIQISVGPSSLSSSMRINAILNGAEIMKVVSVMDLSSHVASRKKRLLEVLVGSIVGGIIVLLLVIAVFLVCRGRRKKKPKLRTVESVGWTPLRMFGGSSLSRMSEGTAYQSPGSYGHFGLKIAFADIQLATNNFDESLVIGSGGFGMVYKGVLRDNLKVAVKRGMPGSRQGLPEFQSEITILSNIRHRHLVSLVGFCEENSEMILVYEYVERGPLKDHLYGSEGLVQPLSWKKRLEICIGAARGLHYLHTGFTQGIIHRDIKSTNILLDENYIAKVADFGLSRSGPCIDETHVSTNVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCVRPAVDPQLDREQVNLAEWALKWQKKGMLEHIIDPYLVGKIKESSLKKFSETAEKCLAEYGVDRPSMGDVLWNLEHSLQLQESDQEVNVTYANSIGDSEVNVTSSIVLRNPPSNIRLEGDYDNNYSDVSTTKVFSQLITREAR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04459 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Vifa1g04459 840 FunFam Receptor-like protein kinase FERONIA 575 787 - -
Vifa1g04459 840 Pfam Protein tyrosine and serine/threonine kinase 504 767 IPR001245 GO:0004672|GO:0006468
Vifa1g04459 840 PANTHER OS07G0166700 PROTEIN 486 778 IPR045272 GO:0004714|GO:0006468
Vifa1g04459 840 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Vifa1g04459 840 SUPERFAMILY Protein kinase-like (PK-like) 472 770 IPR011009 -
Vifa1g04459 840 Gene3D Transferase(Phosphotransferase) domain 1 575 797 - -
Vifa1g04459 840 FunFam Putative receptor-like protein kinase 28 183 - -
Vifa1g04459 840 ProSiteProfiles Protein kinase domain profile. 499 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04459 840 CDD STKc_IRAK 505 772 - -
Vifa1g04459 840 Gene3D Phosphorylase Kinase; domain 1 464 574 - -
Vifa1g04459 840 Gene3D - 210 396 - -
Vifa1g04459 840 Gene3D - 28 184 - -
Vifa1g04459 840 SMART serkin_6 499 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g04459 840 FunFam receptor-like protein kinase FERONIA 464 574 - -
Vifa1g04459 840 Pfam Malectin-like domain 31 394 IPR024788 -
Vifa1g04459 840 FunFam Receptor-like protein kinase FERONIA 210 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04459 Vifa-Chr1 692240609 692243131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04459 23 840 Receptor kinase-like Gene Family AT3G46290 49.346 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa1g04459 Malectin_like 1.9e-31 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04459 - - psat:127128324 1515.75