Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04446 ATGGCGACAGGACTAACCGCCACTATAACCTTGAAACCCTTAAACCGTCACCACAAACCTTTGTTCCCTCATCTCCAAAAACCAAACCCAACATTTATCTTCTCTCCTCTAAGATGCAGAACAACCCCAAAAACACAAAGGTTGAAAAACTTTACCCTTTGTGTTCTCATGGAAGATCCAAAACATGATACCCAATCGGAAATTGAAGAACAAAAACAACCCCTTTTAGTTGTGTCACAAAAAATGGAAGAGAAATTGGCAAGGAAAAAATCAGAGAGATTGACGTATCTTGTTGCAGCTGTTATGTCAAGTCTTGGGATAACATCTTTGGGTGTTTTATCGGTTTATTTAAGGTTTTCATGGCAAATGGAGGGTAGTGGAGAAATTCCTTGGTCTGAAATGTTTGGTACATTTGCTCTATCTGTTGGTGCTGCTGTTGGAATGGAGTTTTGGGCTAGATGGGCTCACAAGGCTCTTTGGCATGCTTCCTTATGGCACATGCATGAGTCCCATCATAGAGCAAGAGAAGGAGCTTTCGAGTTGAACGATGTTTTTGCAATAATCAATGCTGTTCCTGCTATCGCTCTCCTTAACTTTGGTTTCTTTCACAAAGGATTGATCCCTGGTCTTTGCTTCGGTGCCGGTCTTGGCATTACGGTTTTTGGAATGGCCTACATGTTTGTACATGACGGTTTAGTTCATAGAAGATTCCCAGTGGGACCCATTGCCAATGTACCCTATTTCAGAAGGGTAGCTGCAGCCCACAAACTTCACCATTCAGACAAATTCAATGGAGTCCCATATGGGCTGTTTTTGGGACCAAAAGAACTTGAAGAGGTGGGAGGACTAGAAGAGCTAGAGAAAGAGATAAGTAGGAGGACAAAATCATACAATAGTTCATGA 903 0.4208 MATGLTATITLKPLNRHHKPLFPHLQKPNPTFIFSPLRCRTTPKTQRLKNFTLCVLMEDPKHDTQSEIEEQKQPLLVVSQKMEEKLARKKSERLTYLVAAVMSSLGITSLGVLSVYLRFSWQMEGSGEIPWSEMFGTFALSVGAAVGMEFWARWAHKALWHASLWHMHESHHRAREGAFELNDVFAIINAVPAIALLNFGFFHKGLIPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIANVPYFRRVAAAHKLHHSDKFNGVPYGLFLGPKELEEVGGLEELEKEISRRTKSYNSS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04446 300 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 1 297 IPR045019 GO:0016491
Vifa1g04446 300 Pfam Fatty acid hydroxylase 144 271 IPR006694 GO:0005506|GO:0008610|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04446 Vifa-Chr1 691408552 691411067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04446 1 214 Chloroplast and Mitochondria Gene Families AT4G25700 56.637 4.37e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04446 K15746 - gmx:100785541 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04446 1 691408552 691411067 Vifa3g02871 3 807976195 807978501 ECH
Vifa1g04446 1 691408552 691411067 Vifa1g04446 1 691408552 691411067 ECH
Vifa1g04446 1 691408552 691411067 Vifa3g02871 3 807976195 807978501 PCT