Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04442 ATGGCTGCCAATGAAGTGCAAGATGAGCTTATAAAAGCTCTGTTGACTCTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGTCGTGAAGGAGTTCAACTATTGATATCTCTTCTCGGCCTTTCATCAGAACAGCAGCAAGAATGTGCAGTTGCATTGCTTTGCCTTTTATCTAATGAAAATGATGAAAGTAAATGGGCAATTACCGCTGCTGGTGGTATACCTCCGCTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCGGCTAGAATCCTTAAGAATTTGTGCAATCATAGTGAAGACATACGTGCTTGTGTTGAAAGCGCAGATGTTGTTCCTGCATTGTTTAGGCTATTGAAAAATGGAAGTCCTAATGGGAAGGATATTGCAGCAAAGACTATAAATCATTTAATTCATAAATCTGATACTACGACTATCAGTCAGCTTACAGCATTATTGACTAGTGAACTTCCTGATTCTAAGGTATATATTTTGGATGCTTTGAGAAGTATGCTTTGTGTTGCTCCTCTTAGCGACATTTTACGTGAAGGTAGTGCCTCCGGTGATGCATTTGACACCGTGATAATGTTATTGAGCTCTAACAAGGAAGAGACTCAGGCAAAATCTGCTTCAGCTCTGGCTGAAATTTTCGAAGCAAGGAAAGATTTGCGTGAAAGTAGCATTGCTGTCAGAGCTCTTTGTTCAGCCATGAAGCTTCTCAATGTTGAATCCGAAAGTATCCTAATGGAGTCCTCAAACTGCCTGGCTTCAATATTTCTTTCCATCAAAGAGAACAAGGATGTAGCAGCTCTTGCTAGAGATACATTAACCACCCTAGTTACTCTAGCTAACTCTTCAGTTTTGGAAGTGGCAGAGATGGCTATAGGTGCTGTAGCGAATCTTATTTTGGATACTGAAATAGCAAAGAAAGTTGTTCTAGAAGAAGTTATCTTGCCTGCCACCAGAGTATTACGTGAAGGCACAAATTCTGGAAAAACTCGTGCTGCAGCTGCTATCGCTCGCCTCTTACATTCTCAGAAAGTTGATAATGCTGTTACTGATTGTGTGAATCGCGCCGGCACTGTTCTTGCATTAGTTTCCTTTTTGGATTCTTCTGTCAATGAATCTGTTTCCACATCAGAGGCTCTAGAAATTTGGCTATGCAAACGCCCTCTTAATATTCTATATGTTATGATATTTGGAAACAATAGGATTTGGTAA 1239 0.4052 MAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSARILKNLCNHSEDIRACVESADVVPALFRLLKNGSPNGKDIAAKTINHLIHKSDTTTISQLTALLTSELPDSKVYILDALRSMLCVAPLSDILREGSASGDAFDTVIMLLSSNKEETQAKSASALAEIFEARKDLRESSIAVRALCSAMKLLNVESESILMESSNCLASIFLSIKENKDVAALARDTLTTLVTLANSSVLEVAEMAIGAVANLILDTEIAKKVVLEEVILPATRVLREGTNSGKTRAAAAIARLLHSQKVDNAVTDCVNRAGTVLALVSFLDSSVNESVSTSEALEIWLCKRPLNILYVMIFGNNRIW 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04442 412 SMART arm_5 271 309 IPR000225 GO:0005515
Vifa1g04442 412 SMART arm_5 63 103 IPR000225 GO:0005515
Vifa1g04442 412 SMART arm_5 105 145 IPR000225 GO:0005515
Vifa1g04442 412 Gene3D - 2 191 IPR011989 -
Vifa1g04442 412 Gene3D - 192 394 IPR011989 -
Vifa1g04442 412 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 1 391 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Vifa1g04442 412 SUPERFAMILY ARM repeat 5 276 IPR016024 -
Vifa1g04442 412 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 74 116 IPR000225 GO:0005515
Vifa1g04442 412 Pfam Armadillo/beta-catenin-like repeat 63 102 IPR000225 GO:0005515
Vifa1g04442 412 SUPERFAMILY ARM repeat 243 356 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04442 Vifa-Chr1 690452245 690453483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04442 36 158 U-box Gene Family AT2G23140 41.129 1.47e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04442 - - cam:101494820 662.914