Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04414 ATGGTATCCAATAACCCGAACCCACCCGAAGGTTTTTGCTTGGATCCGGGTGGAATGCCTCTACCCGGTTTCGGCCCCTTCGCCTCCGTCTCCTCCACGGTGAACTCGTCTGACGATGCTTCCAAGAAGATCCGTAAACCGTATACTATAACCAAGTCTAGGGAAAATTGGACCGAACCTGAACATGACAAGTTCCTTGAAGCTCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGATCAAAGACTGTTATACAGATACGCAGCCATGCGCAGAAATACTTTCTAAAGGTTCAGAAGAGTGGAGCAAATGAACATCTTCCTCCACCTAGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAAAAAGCTTCCAAAAGTGCTCCTGTGCTTTCACAATTACCGGGATCTTTTCAGTCTTCACCGGCTTTGCTTGAACCTGGATATACGCTGAAGCATGAACCAATGCCTGAAACTCCTATTATGAATAATGCGGTGTCTTCCTGGTCAAACCACACGCCGCAAAACACCAATTTACTAAATGTGCCAAAAGTAAATAATCCTTGCAGTAGCAGTGAAAGTACTCCTAAAGTGCGGCCGATGGTTGGTGAATCCAATAGTCTAGTGAATAAAATCCTTCCATTGAGAGTTCTTCCAGATTTTTCCCAAGTATACAACTTCATTGGCAGTGTATTTGACCCAGAAGCAACTGAGCATTTACAGAAACTTAAACAGATGGACCGTATAGATGTTGAGACGGTGCTTCTGTTGATGAGAAACCTGTCTATCAATTTAACTAGCCCAGATTTTGAGGATCATAAAAAGCTCCTTTCATCCTATGAAGTTGATCTTGAGACAAATAACTATCTCAATCCAGATAGACCGATACGCGACGAGCCATTGAAGAGTGCTACTACTTAG 933 0.4341 MVSNNPNPPEGFCLDPGGMPLPGFGPFASVSSTVNSSDDASKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGANEHLPPPRPKRKAAHPYPQKASKSAPVLSQLPGSFQSSPALLEPGYTLKHEPMPETPIMNNAVSSWSNHTPQNTNLLNVPKVNNPCSSSESTPKVRPMVGESNSLVNKILPLRVLPDFSQVYNFIGSVFDPEATEHLQKLKQMDRIDVETVLLLMRNLSINLTSPDFEDHKKLLSSYEVDLETNNYLNPDRPIRDEPLKSATT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04414 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 103 IPR017930 -
Vifa1g04414 310 FunFam protein REVEILLE 6 isoform X1 56 104 - -
Vifa1g04414 310 MobiDBLite consensus disorder prediction 165 203 - -
Vifa1g04414 310 SMART sant 53 101 IPR001005 -
Vifa1g04414 310 Gene3D - 56 104 - -
Vifa1g04414 310 PANTHER SWI/SNF COMPLEX-RELATED 34 272 - -
Vifa1g04414 310 CDD SANT 56 99 IPR001005 -
Vifa1g04414 310 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Vifa1g04414 310 ProSiteProfiles SANT domain profile. 52 103 IPR017884 -
Vifa1g04414 310 MobiDBLite consensus disorder prediction 152 203 - -
Vifa1g04414 310 ProSiteProfiles Myb-like domain profile. 49 99 IPR001005 -
Vifa1g04414 310 MobiDBLite consensus disorder prediction 104 138 - -
Vifa1g04414 310 Pfam Myb-like DNA-binding domain 54 99 IPR001005 -
Vifa1g04414 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 52 101 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04414 Vifa-Chr1 687747042 687757556 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa1g04414 Myb_DNA-binding 4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04414 - - gmx:100783949 449.514