Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04398 ATGGGCCATCGTTGTTGCAGCAAACAGAAGATCAAAAGAGGATTATGGTCTCCTGAAGAAGATGATAAGCTTGTTACATATATCACCACTCATGGACATAAAAGTTGGAGTTCTGTCCCAAAGTTTGCAGGCCTACAGAGATGTGGAAAGAGTTGCAGATTAAGATGGACAAACTATTTGAGACCGGATCTCAAAAGAGGTTCGTTCACCGCCGAGGAAGAACATATCATAATTGACGTACATAGAATTCTTGGAAACAGATGGGCCCAAATAGCAAAGCATCTTCCTGGTAGAACTGACAATGAAGTGAAGAATTTTTGGAACTCATGCATTAAAAAGAAGCTGATTTCTCAAGGCTTAGATCCACAAACTCACAATCTACTTTCTTCACATAAAAGAAACAACTCATCATATCAAAACTCCAATTCCATTTTCATTCTTAGTTCACAAATGCAACCAAATGCTAATTACCTCGTCGAAACAACAAATCAAACTTTTTCACCACCAAATATTATTCAAACTCCTTCTACAATTGTTTCCACTAACCAATATCAAACATCTTTCAATGTAATTTCAAATCAAATATGTGTTCCCGAGCAAGAACAAACTCAAATATTATCCGAAAACATATTGAACATTTGTTCGTCATCCGGCCTAGATACTACTATTGTTGAGATGTCTAAGAATGAGAATAGCATTTGGGTTTCAAGAGATGAAGAAGGAACACAAGCTCAAGTGGTGAAAGAGAAGGAGAAGATGTGTGAGAAGGGAATGGATTTTAGTGAAATTAATGAGAAGGGAGATATTGAAATGAATGGTTGTTTTGAGAATTCTAAGTTTGATTTTGGGTTGTTGGAGAGTGTACTTAACTCTGAATTTATATCTCATGATCTAGATTATATGGATGAACTTGCATGGAATTTTTAG 927 0.3592 MGHRCCSKQKIKRGLWSPEEDDKLVTYITTHGHKSWSSVPKFAGLQRCGKSCRLRWTNYLRPDLKRGSFTAEEEHIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHKRNNSSYQNSNSIFILSSQMQPNANYLVETTNQTFSPPNIIQTPSTIVSTNQYQTSFNVISNQICVPEQEQTQILSENILNICSSSGLDTTIVEMSKNENSIWVSRDEEGTQAQVVKEKEKMCEKGMDFSEINEKGDIEMNGCFENSKFDFGLLESVLNSEFISHDLDYMDELAWNF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04398 308 CDD SANT 68 108 IPR001005 -
Vifa1g04398 308 SMART sant 65 113 IPR001005 -
Vifa1g04398 308 SMART sant 12 62 IPR001005 -
Vifa1g04398 308 Gene3D - 10 66 - -
Vifa1g04398 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vifa1g04398 308 FunFam MYB transcription factor 5 65 - -
Vifa1g04398 308 CDD SANT 16 60 IPR001005 -
Vifa1g04398 308 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vifa1g04398 308 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vifa1g04398 308 PANTHER MYB DOMAIN PROTEIN 55 1 237 - -
Vifa1g04398 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vifa1g04398 308 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vifa1g04398 308 Gene3D - 67 143 - -
Vifa1g04398 308 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vifa1g04398 308 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Vifa1g04398 308 FunFam Transcription factor MYB86 67 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04398 Vifa-Chr1 683835225 683836643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04398 1 308 MYB Transcription Factor Family AT3G12720 50.482 4.68e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g04398 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04398 K09422 - gmx:100791209 402.519