Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04394 ATGGATTTACTTCTAAGCAGCCTAATAAACACCACAACAATTACACTCCTAATTTCTCTACTTCCATTAGGTTTGTTTCTATTTGTTCATAGCAAAAAAAGAGAGGTACCAATAGCCAAAGGTGCATGGCCAATAGTTGGTCACCTCCCAATTTTTAATGGCACACAATCACCTCATAGAGTGTTAGGTGATTTAGCTGATAAATATGGACCAATATTCACCATCAAACTTGGTTTAAAACATGCTATAATCATCAACAATTGGGAAATGGCAAAGGAATGTTTCACTACAAATGACATGGCTCTTTCATCTCGTCCCAAGCTTGTTGCAACACAACACTTGGCCTATAAAGGAGCCATGTTTGGGTTTGCACCCTATGGTCCTTATTGGCGCCATCTTCGCAAGATTGTAACCCTAGAGATTCTCACCAACCGTCGAATCGAACAACAACAACATATTCGTGTTTCCGAAGTCCGAACATCGATTAAAGAGCTCTTCGATGTTTGGTCTAGTAAAAGAAGTGAGTCTAATTCATCAAACTATGTGTTGGTAGATATGAAGCAATGGTTTACACACATAACATTCAACATGGTTCTTAGAATGGTTGTTGGAAAGAGATATTTCGGTGCAAGAACTAACGTTGAAGAAGAAGAAGCTAAAAGATGTGTGAAAGCTTTGAAAGAGATGATGCATTTGTTTGGGGTGATTACTGTGGGAGATGTTATTCCTTGTTTGAAATTGTTTGATTTTGGTGGTCATGTGAAGGCCATGAATGAAACTTTGAAGGAATTGGATAACATTTTAAATGAGTGGTTGAAGGAGCGTCGCCATGAAAGGAGCTTAGGTGAAAAGGTTGAAGGTGAAGATAAAGACATCATGGATGTGTTACTTTATTTGCTTGATGGAAAAATTATTGAAGGCTTTGATAGTGATACCATAGTCAAAGCCACAATATTGGTATTATTTGCTGGAGGAACTGATACAAGTAGTGTTACCCTAACATGGGCACTAGGTTTGTTATTGAAAAATCCTCATGCAATGAAAAAAGCAATAGAAGAACTTGACATCCATATTGGCAAAACAAGACGTGTAAATGAGTCGGATATAACTAAATTGGTATACATTCAAGCTATAGTCAAAGAAACCCTAAGATTGTATCCGGCTGCTCCTTTATCAGGACCTCATGAATTCTCTGAGAATTGCACCTTAGGTGGATACCAAGTTAAAAAGGGAACTCGATTAATCACAAATCTTGTGAAGATCCATACAGACCCTAATGTTTGGCCCGATCCGTTAGAGTTCAAACCGGAAAGATTTCTTACTACTCATAAAGATATTGATGTTCGAGGTAACCATTTTGAGTTATTACCATTTGGAAGTGGTAGAAGGATGTGTCCTGGAATATCTTTTGGACTTCAAATGGTGCATTACTCTCTAGCTAGCATTTTGCATTCCTTTGAAATCTTAAATCCAACAACACCTGAACTTGTTGATCTGACTGAAGAATTTGGATTAACAAATACTAAAGCTACTCCACTTGAGGTTCTTGTTAAACCACGTTTGTCTTTTAATTGTTATGAAATTATGTAA 1590 0.3723 MDLLLSSLINTTTITLLISLLPLGLFLFVHSKKREVPIAKGAWPIVGHLPIFNGTQSPHRVLGDLADKYGPIFTIKLGLKHAIIINNWEMAKECFTTNDMALSSRPKLVATQHLAYKGAMFGFAPYGPYWRHLRKIVTLEILTNRRIEQQQHIRVSEVRTSIKELFDVWSSKRSESNSSNYVLVDMKQWFTHITFNMVLRMVVGKRYFGARTNVEEEEAKRCVKALKEMMHLFGVITVGDVIPCLKLFDFGGHVKAMNETLKELDNILNEWLKERRHERSLGEKVEGEDKDIMDVLLYLLDGKIIEGFDSDTIVKATILVLFAGGTDTSSVTLTWALGLLLKNPHAMKKAIEELDIHIGKTRRVNESDITKLVYIQAIVKETLRLYPAAPLSGPHEFSENCTLGGYQVKKGTRLITNLVKIHTDPNVWPDPLEFKPERFLTTHKDIDVRGNHFELLPFGSGRRMCPGISFGLQMVHYSLASILHSFEILNPTTPELVDLTEEFGLTNTKATPLEVLVKPRLSFNCYEIM 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04394 529 Coils Coil 254 274 - -
Vifa1g04394 529 PRINTS P450 superfamily signature 324 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS P450 superfamily signature 377 388 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 Gene3D Cytochrome P450 29 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 CDD CYP82 70 520 - -
Vifa1g04394 529 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 417 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 333 359 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 313 330 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PRINTS E-class P450 group I signature 376 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 FunFam Cytochrome P450 82C4 28 518 - -
Vifa1g04394 529 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Vifa1g04394 529 Pfam Cytochrome P450 42 507 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 SUPERFAMILY Cytochrome P450 42 520 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g04394 529 PANTHER CYTOCHROME P450 82C3-RELATED 28 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04394 Vifa-Chr1 683661311 683665196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04394 15 521 Cytochrome P450 AT4G31940 47.610 5.46e-172 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04394 - - gmx:100803451 696.427