Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04391 ATGGCTCCAATGACTCTACCACCTGGATTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTACTATTTAGAAAGAAAAATTACAGGTAGAATCATTGAGCTTGACATCATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAAATCATTTCTTCCAAGCAAGGACATGGAGTGGTATTTTTATAGTCCAAGAGACAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACAGGAAAAGATAGAGCAGTGAGTTCTCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGAATTAGAACCAACTGGGTTATGCATGAATATCGTCTTAATGAATCACACCCTGGTGCTTCTCTCTCTTCTTTGAAGGATTCATATTCGTTGTGTCGAATTTTCAAGAAGACAATTCAAATTCCCACAAAAACTAATGAAGAAGAACAAGCTGAAGATACAAAGAAGGAAATAATGATGCAAGGAGAAGACTCAAGTGGAAATGAGATAATGGAAAATATGGACGAAAAAGTTATTAATAATAATGAATATCCAAAATTTCCATGTGACGCTTCATCTTCTGATGTCACTCAAGGAACATGTACACCAACAGATACATGCAATAATAATAATATAACAGATGATTTTCATGCACAATTTGCTTGTGATGAAGCAAATAGTTCAACTATTTCTTATCCTATTGGAAGCTATCCTTCAAACTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCAATAATCAATTTCCACAAACACCTTTTATGATGGAAGATTTCCCACAAATGGAGACAAAATCAATATTGAAGACTGATATGTGTGAAAACGGCTTTCTTTATGACAAGTACATTGACTGTATGAATGGAACACTAGAAGAAATCATTTCTCTGTGTTCCTCTCAAGATCATTCTGTGGCTTTTCCAATGCTATAG 1014 0.354 MAPMTLPPGFRFHPTDEELVAYYLERKITGRIIELDIIAEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVSSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLNESHPGASLSSLKDSYSLCRIFKKTIQIPTKTNEEEQAEDTKKEIMMQGEDSSGNEIMENMDEKVINNNEYPKFPCDASSSDVTQGTCTPTDTCNNNNITDDFHAQFACDEANSSTISYPIGSYPSNLFQDIEIPMYGGFNNQFPQTPFMMEDFPQMETKSILKTDMCENGFLYDKYIDCMNGTLEEIISLCSSQDHSVAFPML 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04391 337 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Vifa1g04391 337 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vifa1g04391 337 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 215 - -
Vifa1g04391 337 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Vifa1g04391 337 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Vifa1g04391 337 FunFam Nac domain-containing protein 86 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04391 Vifa-Chr1 682441429 682444915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04391 1 323 NAC Transcription Factor Family AT1G54330 52.280 5.24e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g04391 NAM 5.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04391 - - gmx:100808325 511.146