Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g04386 | ATGAATCAACCGCCACCACAACAACCACCTCCCGCTGTTCGTGCTCGTTGCGCCGGTTGCCGGACCTACTTTCACGCGGCGCAAGGCGTGACGGAGTTACCATGTCCGAAATGTCAAATGCCGCATGTATTCTCCATCGATCCATCCGCTGCTCGGATTCGATGTCCCGCTTGTAAAGCTCTGGTTAAAGGACCTAGTGACCTCTCGAAGTTTCCGTGTCCTCAGTGTCGAGTTGAGCTCGATTTTCTTGTTGATGGTGAAGATGTTAACGAGCTACTTAATGAAGTGGAGCAGGATGAAGATGATGGTGGTATGGCTGGAGAAACTTTTACAGATTATCGACCAGCAAAGATATCTATCGGACCTCCACACCCGGATCCAATTGTAGAGACATCTTCCTTGTCTGCTGTGCAGCCACCTGAGCCTACTTATGATCCAAAGATTAAGGATGATTTGGAATGTTCAAAGACTTTGTCATGCTTGCAGATTGAGACTTTGGTTTATGCTTGTCAGAGACACCTTCAACACGTTCCTAATGGTGCTAGGGCAGGGTTCTTTATTGGAGATGGAGCTGGGGTAGGTAAAGGTCGAACAGTTGCTGGGTTAATTTGGGAGAACTGGCACCATGGGAGGAGAAAAGCCTTATGGATTTCTGTTGGCTCAGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGATATGGGAGCAAGTTGCATTGAAGTGCATGCTTTGAATAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGAGTTAGGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCGTCATCTGACAGAGGTCGTACTCGTATCCAACAGCTTGTGCAGTGGTGTGGACCAGGGTTTGACGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAACTGGTAAGAAGCCAACAAGAACTGGTGAAGTGGTACTTGATATCCAGGCTCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGCCTTGGCCTTTGGGGAGGTGGGACTTATTTCCGTGATTTTGGGGAATTTCTAGGTGCTCTTGAAAAAGGGGGGGTTGGAGCTCTAGAATTAGTTGCAATGGACATGAAAGCGAGGGGGATGTATTTATGTCGTACGCTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGACGCACCATTAGAAGATAGAATGTTGGACGTGTATAAAAAAGCTACAGAAGTTTGGGTGGATTTGCGTGAAAAGTTGCTGTCTGCCATTGCCTTACTACCTGAGAAACCTAATACTAGGCAACTATGGAGACTTTACTGGGCAAGCCACCAGCACTTCTTCAGACACTTGTGTATGTCTGCTAAAGTCCCTACTGCAGTGAGATTGGTGAAACAAGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTGCACAGTACGGGGGAAGCAAGGACAGAGGAAGCTGTTTCAAAATTAGGCTATGAACTTGATGACTTTATTTCTGGACCCCGTGAGTTGCTGCTAAAATATGTTGAAGAACATTACCCATTGCCCAAAAAGCCTGAACTTCCCCCCGACGATAGTGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAGGTTCTGACGTTTCAGGAAAATCTAGAGTTAGAAAAGTAGCTAAGTGTCAGGCTCCTAGTGATACTGAAAGTGATGAAGAATCTGAATCTGCCTCTGTTCCTGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGCGCTGCCTCTGGTTTTGAATCTTCCGACTCTGATTTTGAGGAGTTTCAGAAATGTGAAATTTGCAGTACTGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCAATGTGGAAAATACGCTCATCACTCATGCGTGGTGCCTCCAATTGTCGATTTTGTTCTTGAGGAATGGGCATGTCATTTGTGCAAGGGTAGAAATGTTGAATATTTCCCTTCTGGAACGAACATAGTTGAACTCCAGAAGAGTTATGACACCGCCATGGAGTGCAAGAAAAAAATATTAGAGAGGATTCATGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCATGATAAAGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTGAGGGCCCCTAGTGGAATGGGTGTTGTTTATCAAACTCGAAATTCAAAAGATGTAACTGCCGAGATGGTTAACATGCATGAAAAAAAGCTCTTTATGGAAGCTAAGAAGTTAGTTGCTGTCATCTCTGAAGCTGGATCAGCTGGTGTTTCGCTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCACTTAACTCTCGAACTTCCATGGAGTGCCGACCGAGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCAGCACCAGAATACAGGATACTATTTACAAATCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTCTAACTCAGGGGGATCGCAGGGCTGGACTTTCGTTAAGTGCATATAATTACGACAGTGCTTATGGGAAGAGGGCTCTGATGATTTTGTACAGAGGAATAATGGAGCTGGATCCTCTTCCTGTTGTACCTCCAGGATGCTTATCTGACAGACCAGATACAATTCAAGGATTTATCAAGCAGGCAAAATCTGCTCTTGTTTCTGTTGGAATTTTAAGTGATTCCATTCTTGGAGATGATATTGACCCTCGGTGGGTATCTTGCCACATTAATGATAAAGATATACATGATATTGGACGATTTCTAAACCGGCTTTTGGGAATAGCTCCTGAGACTCAGAATAGGCTATTTGAGTTATTTGTGAATATCTTGGATCTTCTTGTTCAAAATGCTCGCATCGATGGTAACCTTGACACAGGCATTATTGACTTGAAAGCTAATGTAATTGAACTGCAAGGGACTCCAAAGACAGTCTATGTTGATCAAATGAGTGGGGCTTCAACTGTTCTGTTCACATTCATTTTGGATCGCGGTGTTTCGTGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGCTGGATTTGGTTCATCCGGTGATGGCTTCTACAAGTCCAGGAGGGAGTGGTTGGGAAAACGCCATTTTATTTTAGCATTTGAAAGTTCTGCTCCGGCTATGTATAAGATAGTTCGTCCCCCTGTCGGAGAATCACCTCGGGATATGCATCTGGCAGAGTTAACTAGAAAATATTCAAAAGTTTCATCTATAGAGGAGGCTCAAAAAGGCTGGGAACGCGAATATAAAGTTTCATCTAAGCAGTGCATGCATGGTCCCAATTGTAAACTTGGTAAAATCTGTTCAGTTGGCTTAAGACTACAGGAAGTAAATGTCTTAGGTGGCGTTATTCTTCCTGTTTGGGGAAACATACAAATGGCTCTCTCTAAGCAGGCCCGGCAAATACATAAAAGGCTCCGAATTGTTCGTGTTGAAACTACATCAGATAACAGACATATAGTTGGGCTTCTTGTCCCTAATGCAGCTGTTAAAACTGTCCTTCATGGTTTAACTTGGGTTATAGAACTGGATGATTGA | 3660 | 0.4374 | MNQPPPQQPPPAVRARCAGCRTYFHAAQGVTELPCPKCQMPHVFSIDPSAARIRCPACKALVKGPSDLSKFPCPQCRVELDFLVDGEDVNELLNEVEQDEDDGGMAGETFTDYRPAKISIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDDLECSKTLSCLQIETLVYACQRHLQHVPNGARAGFFIGDGAGVGKGRTVAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDMGASCIEVHALNKLPYSKLDSKSVGVREGVIFSTYSSLIASSDRGRTRIQQLVQWCGPGFDGLIIFDECHKAKNLVPETGKKPTRTGEVVLDIQARLPEARVVYCSATGASEPRNMAYMVRLGLWGGGTYFRDFGEFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIIDAPLEDRMLDVYKKATEVWVDLREKLLSAIALLPEKPNTRQLWRLYWASHQHFFRHLCMSAKVPTAVRLVKQALMEDKCVVIGLHSTGEARTEEAVSKLGYELDDFISGPRELLLKYVEEHYPLPKKPELPPDDSVKELQRKRHLAGSDVSGKSRVRKVAKCQAPSDTESDEESESASVPESSDSDYGPEGDESAASGFESSDSDFEEFQKCEICSTEEERENLLQCSQCGKYAHHSCVVPPIVDFVLEEWACHLCKGRNVEYFPSGTNIVELQKSYDTAMECKKKILERIHALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGMGVVYQTRNSKDVTAEMVNMHEKKLFMEAKKLVAVISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRILFTNLGGERRFASAVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKRALMILYRGIMELDPLPVVPPGCLSDRPDTIQGFIKQAKSALVSVGILSDSILGDDIDPRWVSCHINDKDIHDIGRFLNRLLGIAPETQNRLFELFVNILDLLVQNARIDGNLDTGIIDLKANVIELQGTPKTVYVDQMSGASTVLFTFILDRGVSWELANTMLNEKQKAGFGSSGDGFYKSRREWLGKRHFILAFESSAPAMYKIVRPPVGESPRDMHLAELTRKYSKVSSIEEAQKGWEREYKVSSKQCMHGPNCKLGKICSVGLRLQEVNVLGGVILPVWGNIQMALSKQARQIHKRLRIVRVETTSDNRHIVGLLVPNAAVKTVLHGLTWVIELDD | 1219 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g04386 | 1219 | Pfam | P-loop containing NTP hydrolase pore-1 | 123 | 423 | IPR039187 | - | |
Vifa1g04386 | 1219 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 605 | 694 | IPR013083 | - | |
Vifa1g04386 | 1219 | FunFam | Protein strawberry notch homolog 2 | 154 | 354 | - | - | |
Vifa1g04386 | 1219 | SMART | PHD_3 | 621 | 667 | IPR001965 | - | |
Vifa1g04386 | 1219 | Gene3D | - | 155 | 354 | IPR027417 | - | |
Vifa1g04386 | 1219 | ProSiteProfiles | Zinc finger PHD-type profile. | 619 | 669 | IPR019787 | - | |
Vifa1g04386 | 1219 | PANTHER | STRAWBERRY NOTCH-RELATED | 63 | 1213 | IPR026741 | GO:0006355 | |
Vifa1g04386 | 1219 | SUPERFAMILY | FYVE/PHD zinc finger | 610 | 669 | IPR011011 | - | |
Vifa1g04386 | 1219 | MobiDBLite | consensus disorder prediction | 534 | 614 | - | - | |
Vifa1g04386 | 1219 | Pfam | PHD-finger | 622 | 667 | IPR019787 | - | |
Vifa1g04386 | 1219 | MobiDBLite | consensus disorder prediction | 534 | 578 | - | - | |
Vifa1g04386 | 1219 | Pfam | C-terminal domain on Strawberry notch homologue | 709 | 998 | IPR026937 | - | |
Vifa1g04386 | 1219 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 120 | 366 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g04386 | Vifa-Chr1 | 681915555 | 681947460 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Vifa1g04386 | AAA_34 | 1.4e-130 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g04386 | K26273 | - | gmx:100808670 | 1783.07 |