Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04386 ATGAATCAACCGCCACCACAACAACCACCTCCCGCTGTTCGTGCTCGTTGCGCCGGTTGCCGGACCTACTTTCACGCGGCGCAAGGCGTGACGGAGTTACCATGTCCGAAATGTCAAATGCCGCATGTATTCTCCATCGATCCATCCGCTGCTCGGATTCGATGTCCCGCTTGTAAAGCTCTGGTTAAAGGACCTAGTGACCTCTCGAAGTTTCCGTGTCCTCAGTGTCGAGTTGAGCTCGATTTTCTTGTTGATGGTGAAGATGTTAACGAGCTACTTAATGAAGTGGAGCAGGATGAAGATGATGGTGGTATGGCTGGAGAAACTTTTACAGATTATCGACCAGCAAAGATATCTATCGGACCTCCACACCCGGATCCAATTGTAGAGACATCTTCCTTGTCTGCTGTGCAGCCACCTGAGCCTACTTATGATCCAAAGATTAAGGATGATTTGGAATGTTCAAAGACTTTGTCATGCTTGCAGATTGAGACTTTGGTTTATGCTTGTCAGAGACACCTTCAACACGTTCCTAATGGTGCTAGGGCAGGGTTCTTTATTGGAGATGGAGCTGGGGTAGGTAAAGGTCGAACAGTTGCTGGGTTAATTTGGGAGAACTGGCACCATGGGAGGAGAAAAGCCTTATGGATTTCTGTTGGCTCAGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGATATGGGAGCAAGTTGCATTGAAGTGCATGCTTTGAATAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGAGTTAGGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCGTCATCTGACAGAGGTCGTACTCGTATCCAACAGCTTGTGCAGTGGTGTGGACCAGGGTTTGACGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAACTGGTAAGAAGCCAACAAGAACTGGTGAAGTGGTACTTGATATCCAGGCTCGACTACCTGAAGCTCGTGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGCCTTGGCCTTTGGGGAGGTGGGACTTATTTCCGTGATTTTGGGGAATTTCTAGGTGCTCTTGAAAAAGGGGGGGTTGGAGCTCTAGAATTAGTTGCAATGGACATGAAAGCGAGGGGGATGTATTTATGTCGTACGCTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGACGCACCATTAGAAGATAGAATGTTGGACGTGTATAAAAAAGCTACAGAAGTTTGGGTGGATTTGCGTGAAAAGTTGCTGTCTGCCATTGCCTTACTACCTGAGAAACCTAATACTAGGCAACTATGGAGACTTTACTGGGCAAGCCACCAGCACTTCTTCAGACACTTGTGTATGTCTGCTAAAGTCCCTACTGCAGTGAGATTGGTGAAACAAGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTGCACAGTACGGGGGAAGCAAGGACAGAGGAAGCTGTTTCAAAATTAGGCTATGAACTTGATGACTTTATTTCTGGACCCCGTGAGTTGCTGCTAAAATATGTTGAAGAACATTACCCATTGCCCAAAAAGCCTGAACTTCCCCCCGACGATAGTGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAGGTTCTGACGTTTCAGGAAAATCTAGAGTTAGAAAAGTAGCTAAGTGTCAGGCTCCTAGTGATACTGAAAGTGATGAAGAATCTGAATCTGCCTCTGTTCCTGAATCTTCTGATTCTGATTACGGACCAGAAGGGGATGAAAGCGCTGCCTCTGGTTTTGAATCTTCCGACTCTGATTTTGAGGAGTTTCAGAAATGTGAAATTTGCAGTACTGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCAATGTGGAAAATACGCTCATCACTCATGCGTGGTGCCTCCAATTGTCGATTTTGTTCTTGAGGAATGGGCATGTCATTTGTGCAAGGGTAGAAATGTTGAATATTTCCCTTCTGGAACGAACATAGTTGAACTCCAGAAGAGTTATGACACCGCCATGGAGTGCAAGAAAAAAATATTAGAGAGGATTCATGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGACCAGTTAGGAGGCCATGATAAAGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTGAGGGCCCCTAGTGGAATGGGTGTTGTTTATCAAACTCGAAATTCAAAAGATGTAACTGCCGAGATGGTTAACATGCATGAAAAAAAGCTCTTTATGGAAGCTAAGAAGTTAGTTGCTGTCATCTCTGAAGCTGGATCAGCTGGTGTTTCGCTGCAGGCAGACAGAAGAGTGAGAAATCAGAAAAGAAGGGTTCACTTAACTCTCGAACTTCCATGGAGTGCCGACCGAGCAATTCAGCAGTTTGGAAGAACTCATAGATCAAATCAAGTCTCAGCACCAGAATACAGGATACTATTTACAAATCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTCTAACTCAGGGGGATCGCAGGGCTGGACTTTCGTTAAGTGCATATAATTACGACAGTGCTTATGGGAAGAGGGCTCTGATGATTTTGTACAGAGGAATAATGGAGCTGGATCCTCTTCCTGTTGTACCTCCAGGATGCTTATCTGACAGACCAGATACAATTCAAGGATTTATCAAGCAGGCAAAATCTGCTCTTGTTTCTGTTGGAATTTTAAGTGATTCCATTCTTGGAGATGATATTGACCCTCGGTGGGTATCTTGCCACATTAATGATAAAGATATACATGATATTGGACGATTTCTAAACCGGCTTTTGGGAATAGCTCCTGAGACTCAGAATAGGCTATTTGAGTTATTTGTGAATATCTTGGATCTTCTTGTTCAAAATGCTCGCATCGATGGTAACCTTGACACAGGCATTATTGACTTGAAAGCTAATGTAATTGAACTGCAAGGGACTCCAAAGACAGTCTATGTTGATCAAATGAGTGGGGCTTCAACTGTTCTGTTCACATTCATTTTGGATCGCGGTGTTTCGTGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGCTGGATTTGGTTCATCCGGTGATGGCTTCTACAAGTCCAGGAGGGAGTGGTTGGGAAAACGCCATTTTATTTTAGCATTTGAAAGTTCTGCTCCGGCTATGTATAAGATAGTTCGTCCCCCTGTCGGAGAATCACCTCGGGATATGCATCTGGCAGAGTTAACTAGAAAATATTCAAAAGTTTCATCTATAGAGGAGGCTCAAAAAGGCTGGGAACGCGAATATAAAGTTTCATCTAAGCAGTGCATGCATGGTCCCAATTGTAAACTTGGTAAAATCTGTTCAGTTGGCTTAAGACTACAGGAAGTAAATGTCTTAGGTGGCGTTATTCTTCCTGTTTGGGGAAACATACAAATGGCTCTCTCTAAGCAGGCCCGGCAAATACATAAAAGGCTCCGAATTGTTCGTGTTGAAACTACATCAGATAACAGACATATAGTTGGGCTTCTTGTCCCTAATGCAGCTGTTAAAACTGTCCTTCATGGTTTAACTTGGGTTATAGAACTGGATGATTGA 3660 0.4374 MNQPPPQQPPPAVRARCAGCRTYFHAAQGVTELPCPKCQMPHVFSIDPSAARIRCPACKALVKGPSDLSKFPCPQCRVELDFLVDGEDVNELLNEVEQDEDDGGMAGETFTDYRPAKISIGPPHPDPIVETSSLSAVQPPEPTYDPKIKDDLECSKTLSCLQIETLVYACQRHLQHVPNGARAGFFIGDGAGVGKGRTVAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDMGASCIEVHALNKLPYSKLDSKSVGVREGVIFSTYSSLIASSDRGRTRIQQLVQWCGPGFDGLIIFDECHKAKNLVPETGKKPTRTGEVVLDIQARLPEARVVYCSATGASEPRNMAYMVRLGLWGGGTYFRDFGEFLGALEKGGVGALELVAMDMKARGMYLCRTLSYKGAEFEIIDAPLEDRMLDVYKKATEVWVDLREKLLSAIALLPEKPNTRQLWRLYWASHQHFFRHLCMSAKVPTAVRLVKQALMEDKCVVIGLHSTGEARTEEAVSKLGYELDDFISGPRELLLKYVEEHYPLPKKPELPPDDSVKELQRKRHLAGSDVSGKSRVRKVAKCQAPSDTESDEESESASVPESSDSDYGPEGDESAASGFESSDSDFEEFQKCEICSTEEERENLLQCSQCGKYAHHSCVVPPIVDFVLEEWACHLCKGRNVEYFPSGTNIVELQKSYDTAMECKKKILERIHALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGMGVVYQTRNSKDVTAEMVNMHEKKLFMEAKKLVAVISEAGSAGVSLQADRRVRNQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRILFTNLGGERRFASAVAKRLESLGALTQGDRRAGLSLSAYNYDSAYGKRALMILYRGIMELDPLPVVPPGCLSDRPDTIQGFIKQAKSALVSVGILSDSILGDDIDPRWVSCHINDKDIHDIGRFLNRLLGIAPETQNRLFELFVNILDLLVQNARIDGNLDTGIIDLKANVIELQGTPKTVYVDQMSGASTVLFTFILDRGVSWELANTMLNEKQKAGFGSSGDGFYKSRREWLGKRHFILAFESSAPAMYKIVRPPVGESPRDMHLAELTRKYSKVSSIEEAQKGWEREYKVSSKQCMHGPNCKLGKICSVGLRLQEVNVLGGVILPVWGNIQMALSKQARQIHKRLRIVRVETTSDNRHIVGLLVPNAAVKTVLHGLTWVIELDD 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04386 1219 Pfam P-loop containing NTP hydrolase pore-1 123 423 IPR039187 -
Vifa1g04386 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 694 IPR013083 -
Vifa1g04386 1219 FunFam Protein strawberry notch homolog 2 154 354 - -
Vifa1g04386 1219 SMART PHD_3 621 667 IPR001965 -
Vifa1g04386 1219 Gene3D - 155 354 IPR027417 -
Vifa1g04386 1219 ProSiteProfiles Zinc finger PHD-type profile. 619 669 IPR019787 -
Vifa1g04386 1219 PANTHER STRAWBERRY NOTCH-RELATED 63 1213 IPR026741 GO:0006355
Vifa1g04386 1219 SUPERFAMILY FYVE/PHD zinc finger 610 669 IPR011011 -
Vifa1g04386 1219 MobiDBLite consensus disorder prediction 534 614 - -
Vifa1g04386 1219 Pfam PHD-finger 622 667 IPR019787 -
Vifa1g04386 1219 MobiDBLite consensus disorder prediction 534 578 - -
Vifa1g04386 1219 Pfam C-terminal domain on Strawberry notch homologue 709 998 IPR026937 -
Vifa1g04386 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 366 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04386 Vifa-Chr1 681915555 681947460 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa1g04386 AAA_34 1.4e-130 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04386 K26273 - gmx:100808670 1783.07