LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g04384	ATGGGTTTCGATCTTGAAGAGAAAGCCAAAGAAGCTTTTGTTGAAGACCACTTTGAGTCGGCGGTTCAACTTCTCACTCAAGCCATTGCTCTTGATCCTACCAAACCTGAACTCTATGCTGATCGTGCTCAAGCCAACATCAAACTCAATAACTTCACCGAGGCTGTTGCTGATGCTAACAAAGCTATCGAGTTGAATCCTTCCCTATCAAAGGCATATTTGCGCAAAGGTAATGCATGTATGAAGCTTGAGGAATATCAGACTGCCAAGACGGCTTTAGAGACCGGTGCCTCATTGGTTGCAGACACATCAAGATTTGTTAATTTGATCAAACAATGCGATAGGCTCATTGCAGAAGAGTCTTGTACTCAGGAAAAGTCCACCACTGCACAGGATGCAACTCCAAAAGTCGTTGTTCTAGAGAAAGATCTCTTAGAGGAGCCCGTAGTGGCGCTAACTAAGCCTAAATATAGGCATGGATTTTACCAGACACCTCAAGAAGTGGTTGTCACAATATTTGCAAAGGGGGTCTCCAAAGAAAGCATTACTGTCGACTTTGGTGAACAAATACTAAGGGTCAACATTGATGTCTCTGGAGAAGATGCATATGTTTTTCAATCTCGCTTATTTGGAAAGATCATACCTTCCCGATGCCGGTATGAAGTTATGTCCACCAAAATTGAAATTCGCCTTGTCAAAGCAGAATCTATTCACTGGAAGTCCCTAGAATTCACCACAGAAACTGCAGTTGCACCAAGGGCTATTGCCTCTTCAGTTACCGGAACTCAAAGACCTACTTACCCGTCCTCAAAACCAAAAAGAGTAGATTGGGATAAGCTAGAAGCTCAAGTTAAGAAAGAGGAGAAAGATGAAAACCTTGATGGCGATGCTGCACTGAACAAATTTTTCCGGGAAATATATTCTGATGCCGATGAGGATACAAGAAGAGCAATGAAAAAGTCATTTGTGGAGTCGAATGGAACAGTGCTGTCTACAAACTGGAAGGAAGTGGGTACAAAGAAGGTTGAAGGAAGTCCTCCAGATGGCATGGAGTTGAAGAAATGGGAATATTAA	1074	0.4264	MGFDLEEKAKEAFVEDHFESAVQLLTQAIALDPTKPELYADRAQANIKLNNFTEAVADANKAIELNPSLSKAYLRKGNACMKLEEYQTAKTALETGASLVADTSRFVNLIKQCDRLIAEESCTQEKSTTAQDATPKVVVLEKDLLEEPVVALTKPKYRHGFYQTPQEVVVTIFAKGVSKESITVDFGEQILRVNIDVSGEDAYVFQSRLFGKIIPSRCRYEVMSTKIEIRLVKAESIHWKSLEFTTETAVAPRAIASSVTGTQRPTYPSSKPKRVDWDKLEAQVKKEEKDENLDGDAALNKFFREIYSDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEGSPPDGMELKKWEY	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g04384	357	PANTHER	PROTEIN SGT1 HOMOLOG	4	355	IPR044563	GO:0051087
	Vifa1g04384	357	ProSiteProfiles	CS domain profile.	154	243	IPR007052	-
	Vifa1g04384	357	Pfam	SGS domain	276	355	IPR007699	-
	Vifa1g04384	357	SMART	tpr_5	2	35	IPR019734	GO:0005515
	Vifa1g04384	357	SMART	tpr_5	36	69	IPR019734	GO:0005515
	Vifa1g04384	357	SMART	tpr_5	70	103	IPR019734	GO:0005515
	Vifa1g04384	357	Pfam	CS domain	158	233	IPR007052	-
	Vifa1g04384	357	SUPERFAMILY	TPR-like	6	112	IPR011990	GO:0005515
	Vifa1g04384	357	Pfam	Tetratricopeptide repeat	18	57	-	-
	Vifa1g04384	357	Pfam	Tetratricopeptide repeat	71	96	IPR019734	GO:0005515
	Vifa1g04384	357	Gene3D	-	155	245	IPR008978	-
	Vifa1g04384	357	ProSiteProfiles	TPR repeat profile.	36	69	IPR019734	GO:0005515
	Vifa1g04384	357	ProSiteProfiles	SGS domain profile.	266	357	IPR007699	-
	Vifa1g04384	357	CDD	p23_CS_SGT1_like	161	243	-	-
	Vifa1g04384	357	Gene3D	Tetratricopeptide repeat domain	4	139	IPR011990	GO:0005515
	Vifa1g04384	357	FunFam	Protein SGT1 homolog A	152	257	-	-
	Vifa1g04384	357	FunFam	Protein SGT1 homolog	1	132	-	-
	Vifa1g04384	357	SUPERFAMILY	HSP20-like chaperones	153	249	IPR008978	-
	Vifa1g04384	357	Coils	Coil	42	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g04384	Vifa-Chr1	681910433	681912443	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g04384	1	99	U-box Gene Family	AT3G07370	29.293	4.69e-07	48.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g04384	K12795		-	gmx:100780174	548.51