Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04375 ATGGCTGCTGAATCAAAAAACTCTGCGGATGAAATGAATAAGAAGAAGCTCCATGGTGACTCTTCAACTTCTGAGTATAATAATTCCATCATGGTTTCTTCAAAGGGTGGTGGAAGTTCACCATCTGATGCAAGATCATGTGTATCATCAATAGGAGATGCTTCTGGAAGTGTTAAAGAAGGGGAGTTGGATCATGAATATCAATCTATGGATCAGAATGTTCCGTATTATGGATACTATTATCCAGGTTATGGTGGTTTCTATGGGGAGCCAGAAAATCAAGGATATTACGTTGGTGCCGAAGCCGTGGATTTTCAGTATCCGGTCATGCAAGCAGATAATGGGTCTTATGTCTATCTCATGCCAGGGTTTCAGACTGGCTACCCTTCATATTTTCCTTTGAATACCGCCGGTGTTGATGGTCAATATCATGTTTACCCTCCTGGTTCGGTCTATCAACAACCAATTGGATCCCCTGCCTATTATCCAGCTTCAGTACCTTATGCGGAGTTGTTTCCATCAACATACTCTTGGGATTCATCGTTAACAGCACAAGATGTATCACAAAGGAATTGTTACAATAATTCGGTTACTAAACCGAGTGGTAGGTCTAATTTTTCTTCCGGTAGTGATATGGTGTCAAAGTCTATGCCTTCTTCTAATGTGGCTAACTCATCCGAAGTGAAGGGTTCGCCACCGTTATTAGAGGTTTCGTCAACTCATGTTAAGCGTAACCAGCCAAAACAAGCAAACAAGGCATCCATTTCTGGTCCGGTTCTCCACTCAGATGCAACGACCAAAGTATCGTTTCCTGTTGCGAAGTTTTCTACATATAATCAAGGAAAGAGTGGATTCCCCTATCAAAGCAACGTGCTTAACGTGAAAGCAAATACAAAGGGATGGGTTAGTACTGAAAAACTGAAACTGAGAAACAAGGTTAACGATTCACTTATTGAGCAGAATCAGGGTCCTAGAACTTCTATTGCGAAAGTTACTTCAAATTTGGGAGATAATTCTGCTCGAACGGTAGCAGTCGAAGAGAGTAGAGACAGGGACAGCAAAATCAGGACAGATCAGTATAACCTTCCCGATTTTCCAACCAAATACGATCATGCACTTTTCTTTGTCATTAAATCATACAGCGAGGATGATGTTCACAAGAGCATCAAGTATGATGTATGGGCGAGCACTCCAAATGGGAATAAGAGAGTCGACAATGCGTTTCAGGATGCACAGAATCGAATGGAAGAGAAAGGAAGCAAGTGTCCTGTATTCCTTTTCTTCTCGGTCAACGCTAGTGGTCAATTTTGCGGAGTAGCCGAGATGATAGGTCGCGTCGATTTCAACAAAAGTATGGATTTCTGGCAGCAAGACAAATGGAATGGATATTTCCCAGTCAAATGGCACATTATAAAGGACATTCCAAATCCTCAACTACGACATATTATCCTCGAGAATAATGATCACAAGCCTGTAACAAACAGTAGAGACACACAAGAGGTGCCTTTTCCGCAAGGTATTGAAATACTCAACATTTTCAAAAACTACGGATCAAGAACATCAATATTAGACGATTTTGATTTCTATGAAAGCCGTCAGAAGGTAATGCAGGAGAAGAGAACAAGACAACCTATGCAACATACAAGCAATACACAGCATATAGATGACTTAACAAGTGCGCTCGGGTCGGTAGACATATCAAGTGTAAAGAAGATGGAAGATTCCAAGTTGGTTGAGAAAGTTAATGACTGA 1752 0.4115 MAAESKNSADEMNKKKLHGDSSTSEYNNSIMVSSKGGGSSPSDARSCVSSIGDASGSVKEGELDHEYQSMDQNVPYYGYYYPGYGGFYGEPENQGYYVGAEAVDFQYPVMQADNGSYVYLMPGFQTGYPSYFPLNTAGVDGQYHVYPPGSVYQQPIGSPAYYPASVPYAELFPSTYSWDSSLTAQDVSQRNCYNNSVTKPSGRSNFSSGSDMVSKSMPSSNVANSSEVKGSPPLLEVSSTHVKRNQPKQANKASISGPVLHSDATTKVSFPVAKFSTYNQGKSGFPYQSNVLNVKANTKGWVSTEKLKLRNKVNDSLIEQNQGPRTSIAKVTSNLGDNSARTVAVEESRDRDSKIRTDQYNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWASTPNGNKRVDNAFQDAQNRMEEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEVPFPQGIEILNIFKNYGSRTSILDDFDFYESRQKVMQEKRTRQPMQHTSNTQHIDDLTSALGSVDISSVKKMEDSKLVEKVND 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04375 583 MobiDBLite consensus disorder prediction 193 258 - -
Vifa1g04375 583 Pfam YT521-B-like domain 374 514 IPR007275 GO:0003723
Vifa1g04375 583 CDD YTH 374 513 IPR007275 GO:0003723
Vifa1g04375 583 Gene3D ph1033 like domains 348 528 - -
Vifa1g04375 583 ProSiteProfiles YTH domain profile. 372 513 IPR007275 GO:0003723
Vifa1g04375 583 MobiDBLite consensus disorder prediction 22 53 - -
Vifa1g04375 583 MobiDBLite consensus disorder prediction 1 60 - -
Vifa1g04375 583 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 96 552 IPR045168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04375 Vifa-Chr1 679994783 679997714 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04375 K20102 - gmx:100791190 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04375 1 679994783 679997714 Vifa1g04375 1 679994783 679997714 ECH