Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04373 ATGTCAGTTGCAAAACTCAAGGCCTCTGACACTACAGATGTCATGAGAACAGAAGACGGAATAGAAACCATAATCAGACAAGCAATTGGCAAAGAACCTCTCTTTTATTTTCCAAGGGTCAGTGACAGCCCAGGACAGTTGATTCCATTTCTTCATGCTTTTGATCCGCAAGAATATCCAGGCTGGCCTTTGCTCTATCCTCTGAAGGTTCCGACAGATAAATGTGAGAAGTGTTCTCAAGAGTTCTGCTCCACTCTTAACTATAGAAGACATTTACCTGTGCATCACCGATTCAAAAAGCTTGATAAGGATACTTCAAAAACTAGGGAGCTTTTAGGGGCATATTGGGATAAGCTCTCGGTAGAAGAGGTGAAGGAAGTTCTATCGTTTGAAAATGTGATGCTGGAGGAAGTTCCTGGGTCTTCGGTTTTGCATGCTTTGGTGACTCTTACTCAAAAACAAGGATTATTTTTTCTTCTTCCGTGTTATCTGAGGGCCGGCGCTGCCCTATTGGACATTGTTCAATCTAAACCTTCCAGTTTTCCTATACCTTCCCAGGAGTTGTTCAGCATCCTTGATGATGCTAGTGAAGGAACGTTTTTATTGGGGACAACAGTGTCAATGCAAAAATCTGTTTTTCCTGAAGGGGCTGGAAAAATTGGTCTTGAACCGAAAAATGTAGTGGCTTGTTCAAGCTTCTTGCTAGAACAGATATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAAAAGCAATTGGTGGATGAGGAAGAAGCTGCCCATAAAAGACAAGCTAAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGGCAAAAAGAACAGAAGGCTAAGGAACAAAGAAACAAGGTTGAGGTAGATACTGAAGGGAATATTGACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATAATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATAATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTGACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATTTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTGACAGTACAATGAAGACTGTTTCACCAGCAGAAACGTCTTTGGATACATATGATTTTGAAGCTCAAAATCCAGAGGAGTCTGCAAAGAACGCTCCACCTGTACCTCTTCAATCCCCTGACATCAATGAAGGAAAAAACGGGAATACCCTGTCAGAACATGATTTTGGTGCTGATCTGAATATTCGACAGTCACAACGTGAACTTGATGATCTTGCAAGATGGCCCCAGCTTCCAAAATTCTCCCAACGCACTGCCAGTGATCAGCTTACAAATAAGAATCCTCCAATTTCAAATCCTGAAGTCATTCAGAAATATGGAACCCGCGATGATCAGAGGGCAGATGGTACATTTAATGCTGGTAAAGCATGGCATGGAAAGCTAAAACCTGAAATTGACAGGATGGTTTTAAAAACCGTAACAAAGACTGAACCAGACCTTGTAAAGAATCATGAATTTTTGATAGGATCTATATCTGTCAATCTTGCCAACTGCAGCCAATCAGAGGGCAATGTGGTGGCATCTCAAGAAAAATGTTTGGTTGAGAATGCGGTGGCAATTGAAGAAAAGAATTTGATTGAGAATACGTCGGACAAGCAGAATAGTTCTCAGAATAAACCAAAGAAACCTGATTTACGTACTAGTGAGAATAATCAGTCAATTGTTGAGCCTTCCACAGCAGTTATCCAGTTTGAAACTGAAGATCTATTTCCAGCTCAAAGTGGTGGCATGGAAGATGCTGCAGTTAATAAAAATCAAGTTTGTCAGAACCGATCAAGGATTTGTAGTGATGAAAGTGGTTTTGAAAACAAAGTTTCCAATACCGAGAGTAGAGTAGATCCGGTAAAGCAAAAGTTTTCGATTCAGACTGCTAGAGACTTTCTTGCAAAAAGATGGGAAGAAGCTCTCTCATCAGATCATGTGAAATTGGTTATTTCCCTCGACTCTGAACTTTCTGGGAACCAGGAAGCAAAAGAAGAAGACATTCTGCTTTCAACCACCAAAGCTTCTAAATCCAAATGCAGAGGGAAGGCTAAAAAGGAAACCAACGACAAAGAGAAAACCACCTAA 2553 0.4015 MSVAKLKASDTTDVMRTEDGIETIIRQAIGKEPLFYFPRVSDSPGQLIPFLHAFDPQEYPGWPLLYPLKVPTDKCEKCSQEFCSTLNYRRHLPVHHRFKKLDKDTSKTRELLGAYWDKLSVEEVKEVLSFENVMLEEVPGSSVLHALVTLTQKQGLFFLLPCYLRAGAALLDIVQSKPSSFPIPSQELFSILDDASEGTFLLGTTVSMQKSVFPEGAGKIGLEPKNVVACSSFLLEQILVKAWLADKDAEALRCQKQLVDEEEAAHKRQAKILERKRQKKLRQKEQKAKEQRNKVEVDTEGNIDSTMKTVSPAETSLDTYDVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYNVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYDVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYNVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYDVEAQNPEVDTEGNIDSTMKTVSPAETSLDTYDFEAQNPEVDTEGNIDSTMKTVSPAETSLDTYDFEAQNPEESAKNAPPVPLQSPDINEGKNGNTLSEHDFGADLNIRQSQRELDDLARWPQLPKFSQRTASDQLTNKNPPISNPEVIQKYGTRDDQRADGTFNAGKAWHGKLKPEIDRMVLKTVTKTEPDLVKNHEFLIGSISVNLANCSQSEGNVVASQEKCLVENAVAIEEKNLIENTSDKQNSSQNKPKKPDLRTSENNQSIVEPSTAVIQFETEDLFPAQSGGMEDAAVNKNQVCQNRSRICSDESGFENKVSNTESRVDPVKQKFSIQTARDFLAKRWEEALSSDHVKLVISLDSELSGNQEAKEEDILLSTTKASKSKCRGKAKKETNDKEKTT 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04373 850 MobiDBLite consensus disorder prediction 271 300 - -
Vifa1g04373 850 MobiDBLite consensus disorder prediction 284 300 - -
Vifa1g04373 850 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 846 - -
Vifa1g04373 850 MobiDBLite consensus disorder prediction 686 714 - -
Vifa1g04373 850 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Vifa1g04373 850 Coils Coil 270 298 - -
Vifa1g04373 850 MobiDBLite consensus disorder prediction 575 596 - -
Vifa1g04373 850 ProSitePatterns Zinc finger C2H2 type domain signature. 75 96 IPR013087 -
Vifa1g04373 850 MobiDBLite consensus disorder prediction 517 548 - -
Vifa1g04373 850 MobiDBLite consensus disorder prediction 814 850 - -
Vifa1g04373 850 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04373 Vifa-Chr1 679631059 679642808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04373 597 846 C2H2 Transcription Factor Family AT4G25610 25.200 1.87e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04373 - - tpra:123909032 510.375