Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04372 ATGTCAGTTGCAAAACTCAAGGCCTCTGACACTACAGATGTCATGAGAACAGAAGACGGAATAGAAACCATAATCAGACAAGCAATTGGCAAAGAACCTCTCTTTTATTTTCCAAGGGTCAGTGACAGCCCAGGACAGTTGATTCCATTTCTTCATGCTTTTGATCCGCAAGGTGTTGGCAATGTTTTTTCAGAATATCCAGGCTGGCCTTTGCTCTATCCTCTGAAGGTTCCGACAGATAAATGTGAGAAGTGTTCTCAAGAGTTCTGCTCCACTCTTAACTATAGAAGACATTTACCTGTGCATCACCGATTCAAAAAGCTTGATAAGGATACTTCAAAAACTAGGGAGCTTTTAGGGGCATATTGGGATAAGCTCTCGGTAGAAGAGGTGAAGGAAGTTCTATCGTTTGAAAATGTGATGCTGGAGGAAGTTCCTGGGTCTTCGGTTTTGCATGCTTTGGTGACTCTTACTCAAAAACAAGGATTATTTTTTCTTCTTCCGTGTTATCTGAGGGCCGGCGCTGCCCTATTGGACATTGTTCAATCTAAACCTTCCAGTTTTCCTATACCTTCCCAGGAGTTGTTCAGCATCCTTGATGATGCTAGTGAAGGAACGTTTTTATTGGGGACAACAGTGTCAATGCAAAAATCTGTTTTTCCTGAAGGGGCTGGAAAAATTGGTCTTGAACCGAAAAATGTAGTGGCTTGTTCAAGCTTCTTGCTAGAACAGATATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAAAAGCAATTGGTGGATGAGGAAGAAGCTGCCCATAAAAGACAAGCTAAGATTTTGGAGAGGAAACGCCAGAAAAAGCTTAGGCAAAAAGAACAGAAGGCTAAGGAACAAAGAAACAAGGTTGAGGTAGATACTGAAGGGAATATTGACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATAATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATAATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTTACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATGTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTGACAGTACAATGAAGACTGTTTCACCAGCAGAAACATCTTTGGATACATATGATTTTGAAGCTCAAAATCCAGAGGTAGATACTGAAGGGAATATTGACAGTACAATGAAGACTGTTTCACCAGCAGAAACGTCTTTGGATACATATGATTTTGAAGCTCAAAATCCAGAGGAGTCTGCAAAGAACGCTCCACCTGTACCTCTTCAATCCCCTGACATCAATGAAGGAAAAAACGGGAATACCCTGTCAGAACATGATTTTGGTGCTGATCTGAATATTCGACAGTCACAACGTGAACTTGATGATCTTGCAAGATGGCCCCAGCTTCCAAAATTCTCCCAACGCACTGCCAGTGATCAGCTTACAAATAAGAATCCTCCAATTTCAAATCCTGAAGTCATTCAGAAATATGGAACCCGCGATGATCAGAGGGCAGATGGTACATTTAATGCTGGTAAAGCATGGCATGGAAAGCTAAAACCTGAAATTGACAGGATGGTTTTAAAAACCGTAACAAAGACTGAACCAGACCTTGTAAAGAATCATGAATTTTTGATAGGATCTATATCTGTCAATCTTGCCAACTGCAGCCAATCAGAGGGCAATGTGGTGGCATCTCAAGAAAAATGTTTGGTTGAGAATGCGGTGGCAATTGAAGAAAAGAATTTGATTGAGAATACGTCGGACAAGCAGAATAGTTCTCAGAATAAACCAAAGAAACCTGATTTACGTACTAGTGAGAATAATCAGTCAATTGTTGAGCCTTCCACAGCAGTTATCCAGTTTGAAACTGAAGATCTATTTCCAGCTCAAAGTGGTGGCATGGAAGATGCTGCAGTTAATAAAAATCAAGTTTGTCAGAACCGATCAAGGATTTGTAGTGATGAAAGTGGTTTTGAAAACAAAGTTTCCAATACCGAGAGTAGAGTAGATCCGGTAAAGCAAAAGTTTTCGATTCAGACTGCTAGAGACTTTCTTGCAAAAAGATGGGAAGAAGCTCTCTCATCAGATCATGTGAAATTGGTTATTTCCCTCGACTCTGAACTTTCTGGGAACCAGGAAGCAAAAGAAGAAGACATTCTGCTTTCAACCACCAAAGCTTCTAAATCCAAATGCAGAGGGAAGGCTAAAAAGGAAACCAACGACAAAGAGAAAACCACCTAA 2574 0.4013 MSVAKLKASDTTDVMRTEDGIETIIRQAIGKEPLFYFPRVSDSPGQLIPFLHAFDPQGVGNVFSEYPGWPLLYPLKVPTDKCEKCSQEFCSTLNYRRHLPVHHRFKKLDKDTSKTRELLGAYWDKLSVEEVKEVLSFENVMLEEVPGSSVLHALVTLTQKQGLFFLLPCYLRAGAALLDIVQSKPSSFPIPSQELFSILDDASEGTFLLGTTVSMQKSVFPEGAGKIGLEPKNVVACSSFLLEQILVKAWLADKDAEALRCQKQLVDEEEAAHKRQAKILERKRQKKLRQKEQKAKEQRNKVEVDTEGNIDSTMKTVSPAETSLDTYDVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYNVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYDVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYNVEAQNPEVDTEGNIYSTMKTVSPAETSLDTYDVEAQNPEVDTEGNIDSTMKTVSPAETSLDTYDFEAQNPEVDTEGNIDSTMKTVSPAETSLDTYDFEAQNPEESAKNAPPVPLQSPDINEGKNGNTLSEHDFGADLNIRQSQRELDDLARWPQLPKFSQRTASDQLTNKNPPISNPEVIQKYGTRDDQRADGTFNAGKAWHGKLKPEIDRMVLKTVTKTEPDLVKNHEFLIGSISVNLANCSQSEGNVVASQEKCLVENAVAIEEKNLIENTSDKQNSSQNKPKKPDLRTSENNQSIVEPSTAVIQFETEDLFPAQSGGMEDAAVNKNQVCQNRSRICSDESGFENKVSNTESRVDPVKQKFSIQTARDFLAKRWEEALSSDHVKLVISLDSELSGNQEAKEEDILLSTTKASKSKCRGKAKKETNDKEKTT 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04372 857 Coils Coil 277 305 - -
Vifa1g04372 857 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 853 - -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 582 603 - -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 821 857 - -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 524 555 - -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 582 602 - -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 291 307 - -
Vifa1g04372 857 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 278 307 - -
Vifa1g04372 857 MobiDBLite consensus disorder prediction 693 721 - -
Vifa1g04372 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04372 Vifa-Chr1 679631059 679642808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04372 604 853 C2H2 Transcription Factor Family AT4G25610 25.200 2.10e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04372 1 679631059 679642808 Vifa1g04372 1 679631059 679642808 ECH
Vifa1g04372 1 679631059 679642808 Vifa3g02896 3 813608985 813615159 PCT