Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04370 ATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATCGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTGGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGCAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGCATGAATTGATAGATAATGCAGCAGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAGATTAGAGAAATTCGTGAATGTTGAAGGAATGATACCCTCATTAAGAGACCCGGAGCGCTTTAGTTTTTGGTTGGCTACCCTCTCCAATCGGAGGCCTTCAGAAAGATTGGAACTCCTACGCATTAGAGATACCAAAGAGCAAGGAGTGGATATCAATGCAATCGATAGAATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATAAATGTTGTTAAACTCCTTTTGCAGGTTGGTGTAAGACTTGATATCAAGGTCAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTCCGTGTTGGTGTCGGACTAGCCGAGCCTTTTCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACATCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCAGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACATGAAACAGCACTTTTACTTGCAAGAGAAAAAAATTTGAAAGGAAATGATGCAGAGAATGTGATCATGGATGAGTTAGCTAGAAGAGTAGTATTGTGCGGTGCGCGTGTGAAGAAACATACAAAATGTGGTAAAGGACTTTCATGA 2475 0.4044 MPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKSSSARSIMPKLNFPYNRTSSSDVEKAISLAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASAEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRHELIDNAAESARSWIGRAKEAARHDQRRLEKFVNVEGMIPSLRDPERFSFWLATLSNRRPSERLELLRIRDTKEQGVDINAIDRILLQSSKPFLHTNVDCNALFAAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEEFRVGVGLAEPFPITWCAVEYFESTGTILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTSTSIHWTKEYQKAVLDIIRARKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETALLLAREKNLKGNDAENVIMDELARRVVLCGARVKKHTKCGKGLS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04370 824 Gene3D - 270 593 IPR036770 -
Vifa1g04370 824 ProSiteProfiles Ankyrin repeat profile. 638 670 IPR002110 GO:0005515
Vifa1g04370 824 SUPERFAMILY RING/U-box 194 249 - -
Vifa1g04370 824 ProSiteProfiles Ankyrin repeat profile. 743 775 IPR002110 GO:0005515
Vifa1g04370 824 SUPERFAMILY Ankyrin repeat 462 785 IPR036770 -
Vifa1g04370 824 SMART ANK_2a 501 530 IPR002110 GO:0005515
Vifa1g04370 824 SMART ANK_2a 743 772 IPR002110 GO:0005515
Vifa1g04370 824 SMART ANK_2a 709 739 IPR002110 GO:0005515
Vifa1g04370 824 SMART ANK_2a 534 563 IPR002110 GO:0005515
Vifa1g04370 824 SMART ANK_2a 376 405 IPR002110 GO:0005515
Vifa1g04370 824 SMART ANK_2a 638 667 IPR002110 GO:0005515
Vifa1g04370 824 SMART ANK_2a 463 492 IPR002110 GO:0005515
Vifa1g04370 824 CDD RING_CH-C4HC3_MARCH 198 246 - -
Vifa1g04370 824 Coils Coil 618 638 - -
Vifa1g04370 824 Pfam Ankyrin repeats (3 copies) 693 774 IPR002110 GO:0005515
Vifa1g04370 824 Pfam Ankyrin repeats (3 copies) 481 563 IPR002110 GO:0005515
Vifa1g04370 824 Pfam RING-variant domain 198 245 IPR011016 GO:0008270
Vifa1g04370 824 Gene3D - 687 791 IPR036770 -
Vifa1g04370 824 ProSiteProfiles Ankyrin repeat profile. 534 566 IPR002110 GO:0005515
Vifa1g04370 824 Gene3D - 594 686 IPR036770 -
Vifa1g04370 824 PANTHER OS02G0165000 PROTEIN 3 275 - -
Vifa1g04370 824 ProSiteProfiles Ankyrin repeat region circular profile. 743 775 - -
Vifa1g04370 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 253 IPR013083 -
Vifa1g04370 824 ProSiteProfiles Zinc finger RING-CH-type profile. 190 252 IPR011016 GO:0008270
Vifa1g04370 824 ProSiteProfiles Ankyrin repeat region circular profile. 638 665 - -
Vifa1g04370 824 SMART ringv_2 197 246 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04370 Vifa-Chr1 679250019 679253956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04370 186 252 C3H Transcription Factor Family AT2G37950 42.647 6.85e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04370 - - mtr:11444172 769.615