Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04361 ATGCAATCTTTGGTTTCATCAAAGTTTCTTGTGCTTGTTGGAGAATCATTCCCTATGAGAAGGGCTTTATTGAATCCTAGATTTGCTTGGTTTCATAGTAGTGTTAGATGTATGAGTAATGTTGAACCCAATCACGGTTCTCTCACCCTTTCAAGCCTTGGTTTGGAAACTGAAATTGAGCCTAAGGTTAGAACTAAATCAAAAATTGTTAAGCCATTAGGTTCATCTGAGGGGTTCAAGAATAAAAGAAAACCCTTTGGAAATAGGGTTTTGAATAAGCAAGAAATAGAGTCTGCCCCTTTTGCGGCTAAGTCGTTTTCGGAACTCGGTGTTCCGGAGGTTTTGATTCAGAGACTAGGAAAAGAGGGTTTCGATGTTCCGACCGAGGTTCAATCTGCTGCGGTTCCGACAATTTTGAAGAACCGTGATGTTATAATTCAGTCATATACTGGTTCGGGGAAAACGTTGGCTTATCTGCTTCCTATATTGTCGGTTATCGGGCCGTTGAGAGGTGAGAATTGTGGTGGTGATGGTGATGGTGGTGAAACGGGGAAGAAATTGGGTGTTGAAGCGGTGATTGTTGCTCCGTCTAGGGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGATATTGGGAATGGATAACAAGAAAATGGTGCAGCAGCTTGTGGGAGGTGCGAACCGAACTAGGCAGGAAGAGGCTTTGAAGAAAAATAAACCTGCCATTGTTGTTGGTACGCCGGGTAGGATAGCTGAGCTAAGTGCGAGCGGGAAACTTCATACACACGGGTGTCGGTATTTGGTATTGGATGAAGTTGATGAGCTTCTTTCGTTTAATTTCCGGGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCGGGTGCAGACCTAAACTCAAATGCGAAAAAGACCGAGCGTCAATTAATTATGGTTTCCGCAACTGTTCCATTTTCGGTTGTAAGAGCAGCTAAAAGCTGGGGTTGTGATCCACTTCTTGTTCAAGCTAAGAAAATTGTACCGCTTGAAACTTTGTCTCCTGAGCCGGTCAATTTGTCACCGAGCTCGAACAGTACCTTGTCTAAGCCATCTAAGGCCGCAGTCGAGAGTCTACCTCCAGCATTGAAACACTATTATTGTGTAGTGAGGTTGCAACACAAAGTTGATACATTGAGAAGGTGTATTCATGCGTTGGATGCAAAATTCGTGATAGTTTTCATGAATCATACTAAGCAGCTAAAGGACGTTGTCTTCAAACTGGAAGCCCGTGGGGTGAAAGCCGCAGAGTTACACGGAGATCTCGGGAAGCTCGGTAGGTCGACAACTCTGAAGAAGTTCAAGAACGGCGAGGTTAGAGTTCTTGTGACAAATGAATTGTCAGCAAGGGGTTTGGATGTGGCGGAATGTGATCTTGTGGTTAACCTCGAGTTGCCGACGGATTCAATTCACTATGCACATCGAGCCGGTCGAACAGGTCGGCTTGGTAGGAACGGTACGGTGCTAACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAATTGAAGAAGCAACTTGAAATACCGATAGCATGCTGTAATTTTGTTGAAGGAAAGCTTCTTGTCACGGAAGAAGAAGAACATACACTAAGCGACACTTCTTGA 1650 0.443 MQSLVSSKFLVLVGESFPMRRALLNPRFAWFHSSVRCMSNVEPNHGSLTLSSLGLETEIEPKVRTKSKIVKPLGSSEGFKNKRKPFGNRVLNKQEIESAPFAAKSFSELGVPEVLIQRLGKEGFDVPTEVQSAAVPTILKNRDVIIQSYTGSGKTLAYLLPILSVIGPLRGENCGGDGDGGETGKKLGVEAVIVAPSRELGMQIVREFEKILGMDNKKMVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLHTHGCRYLVLDEVDELLSFNFREDMHRLLEHVGRRSGADLNSNAKKTERQLIMVSATVPFSVVRAAKSWGCDPLLVQAKKIVPLETLSPEPVNLSPSSNSTLSKPSKAAVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLKKQLEIPIACCNFVEGKLLVTEEEEHTLSDTS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04361 549 Gene3D - 374 530 IPR027417 -
Vifa1g04361 549 CDD DEADc 115 337 - -
Vifa1g04361 549 Pfam Helicase conserved C-terminal domain 392 497 IPR001650 -
Vifa1g04361 549 Gene3D - 76 338 IPR027417 -
Vifa1g04361 549 SMART helicmild6 416 497 IPR001650 -
Vifa1g04361 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 336 IPR014001 -
Vifa1g04361 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 536 IPR001650 -
Vifa1g04361 549 SMART ultradead3 123 355 IPR014001 -
Vifa1g04361 549 CDD SF2_C_DEAD 377 506 - -
Vifa1g04361 549 Pfam DEAD/DEAH box helicase 128 322 IPR011545 GO:0003676|GO:0005524
Vifa1g04361 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 518 IPR027417 -
Vifa1g04361 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 104 132 IPR014014 GO:0003724
Vifa1g04361 549 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 76 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04361 Vifa-Chr1 677235313 677236962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04361 105 531 Eukaryotic Initiation Factors Gene Family AT3G19760 25.635 3.36e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04361 - - gmx:100812968 833.943