Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04352 ATGACAAATTCTAAGTGGTCTCAACTCTTGTTCCTTTGCATCATAACATCAACCCTTTTCCTAAACAGCACCAATGTAGCATTTGCAACAGAGCCATTTGTGGAACAAGAGAAAGACAGGATTGTTAGCGCACTCCCAGGTCAAAACTTCAACATAACATTCAAACACTATTCTGGGTATATCACTGTCAATGAGGAAGTTGGAAGGACACTGTTTTACTGGTTCATTGAAGCAGATCACCCAGATCCTACTTCAAAGCCCCTCCTTTTATGGTTCAATGGTGGTTATGGCTGTTCTTCTATAGCTTATGGAGAAGCTGAGGAAATTGGTCCTTTTCGGATTAATACAGATGGCAAAACCCTTTATCTTAATCCTTATTCTTGGAATCAAGTTGCCAATATTCTTTATATTGACTCTCCTGTTGGAGTTGGATTTTCATATTCAAATAACCCATCTGACATTCTCAACAATGGAGATAAGAGGACAGCTGAGGATAATCTCATATTTCTATTGAACTGGTTTAAGCGTTTTCCCCAGTATAAAAAAACAGACTTTTTCATCAGTGGCGAGAGCTATGCAGGACATTATGTTCCACAACTTAGCCAACTTATTGTCAGCTACAACTCAGCTACAAAACAAGATTCTATAAATTTCAAAGGTTACATGCTAGGAAATGCTCTAATAGATGATTTCCGTGATCAATTGGGGATATTTCAGTTTATGTGGTCAAGTGGTATGATTTCGGATAAAACATTCAAGCTCTTGAACCTTCTATGTGATTTTCAGTCAATCAAACAGCCGTCGGAGTCATGTAAAAAACTATGGGAAATTGCCTATAAAGAACTTGGTAATATAGACCCACACAGTATCTTTACCTCTACTTGCCATGCTAACGATAATCAGCGCGTTAAAAGAAAGCTAAGTGCAGGAAGACTCAGAAGGGCGTATGATCCTTGCACCACGAAGCACAGCACTATATACTTCAATCAACCCGAGGTCCAAAGAATTCTACATGTTGATCCAAATCACAAGCCTCATAAATGGCAGCCCTGCAGCTATGATGTAGGTATTAACTGGAAGGATTCTCCTAGGACAGTTCTTAATATATATCGTGAACTTATTCCTACCGGACTGCGAATATGGATATTCAGTGGTAATACAGATGCTGTTGTTCCGGTAACATCTACTCGTTATTCCATAAATGCTCTCAAGCTTCCAACTGTGAGCCCCTGGCGTGCATGGTATGATGATGGGGAGGTAGGAGGATGGACGCAAGAATACACCGGACTCACCTTTGTAACTGTAAGGGGTGCTGGGCACGAAGTTCCTCTGCATAGACCAAAACTTGCTCTAACATTGTTCAAATCCTTTTTAGCAGGAACCTCCATGCCAACTCTTAAACCACTCACACTCGCGGCCTCCTATTGA 1428 0.4062 MTNSKWSQLLFLCIITSTLFLNSTNVAFATEPFVEQEKDRIVSALPGQNFNITFKHYSGYITVNEEVGRTLFYWFIEADHPDPTSKPLLLWFNGGYGCSSIAYGEAEEIGPFRINTDGKTLYLNPYSWNQVANILYIDSPVGVGFSYSNNPSDILNNGDKRTAEDNLIFLLNWFKRFPQYKKTDFFISGESYAGHYVPQLSQLIVSYNSATKQDSINFKGYMLGNALIDDFRDQLGIFQFMWSSGMISDKTFKLLNLLCDFQSIKQPSESCKKLWEIAYKELGNIDPHSIFTSTCHANDNQRVKRKLSAGRLRRAYDPCTTKHSTIYFNQPEVQRILHVDPNHKPHKWQPCSYDVGINWKDSPRTVLNIYRELIPTGLRIWIFSGNTDAVVPVTSTRYSINALKLPTVSPWRAWYDDGEVGGWTQEYTGLTFVTVRGAGHEVPLHRPKLALTLFKSFLAGTSMPTLKPLTLAASY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04352 475 FunFam Carboxypeptidase 35 297 - -
Vifa1g04352 475 Gene3D - 366 460 - -
Vifa1g04352 475 ProSitePatterns Serine carboxypeptidases, histidine active site. 430 447 IPR033124 GO:0004185
Vifa1g04352 475 SUPERFAMILY alpha/beta-Hydrolases 39 463 IPR029058 -
Vifa1g04352 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vifa1g04352 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 430 443 IPR001563 GO:0004185|GO:0006508
Vifa1g04352 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vifa1g04352 475 PRINTS Carboxypeptidase C serine protease (S10) family signature 173 198 IPR001563 GO:0004185|GO:0006508
Vifa1g04352 475 Pfam Serine carboxypeptidase 46 459 IPR001563 GO:0004185|GO:0006508
Vifa1g04352 475 FunFam Carboxypeptidase 316 463 - -
Vifa1g04352 475 Gene3D - 319 355 - -
Vifa1g04352 475 Gene3D alpha/beta hydrolase 33 307 IPR029058 -
Vifa1g04352 475 ProSitePatterns Serine carboxypeptidases, serine active site. 187 194 IPR018202 GO:0004185
Vifa1g04352 475 FunFam Carboxypeptidase 366 460 - -
Vifa1g04352 475 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 447 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04352 Vifa-Chr1 676121169 676123666 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04352 347 463 Calmodulin-binding Proteins AT2G22960 26.271 5.78e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04352 K16297 - gmx:100805227 702.59